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Clustered CTCF binding is an evolutionary mechanism to maintain topologically associating domains
Kentepozidou, Elissavet, Aitken, Sarah J., Feig, Christine, Stefflova, Klara, Ibarra-Soria, Ximena, Odom, Duncan T., Roller, Maša, Flicek, Paul
Published in Genome Biology (07.01.2020)
Published in Genome Biology (07.01.2020)
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Journal Article
Dynamic Rewiring of Promoter-Anchored Chromatin Loops during Adipocyte Differentiation
Siersbæk, Rasmus, Madsen, Jesper Grud Skat, Javierre, Biola Maria, Nielsen, Ronni, Bagge, Emilie Kristine, Cairns, Jonathan, Wingett, Steven William, Traynor, Sofie, Spivakov, Mikhail, Fraser, Peter, Mandrup, Susanne
Published in Molecular cell (04.05.2017)
Published in Molecular cell (04.05.2017)
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Journal Article
Topologically associating domain underlies tissue specific expression of long intergenic non-coding RNAs
Hamba, Yu, Kamatani, Takashi, Miya, Fuyuki, Boroevich, Keith A., Tsunoda, Tatsuhiko
Published in iScience (19.05.2023)
Published in iScience (19.05.2023)
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Journal Article
SYCP2 Translocation-Mediated Dysregulation and Frameshift Variants Cause Human Male Infertility
Schilit, Samantha L.P., Menon, Shreya, Friedrich, Corinna, Kammin, Tammy, Wilch, Ellen, Hanscom, Carrie, Jiang, Sizun, Kliesch, Sabine, Talkowski, Michael E., Tüttelmann, Frank, MacQueen, Amy J., Morton, Cynthia C.
Published in American journal of human genetics (02.01.2020)
Published in American journal of human genetics (02.01.2020)
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Journal Article
Congenital microcoria deletion in mouse links Sox21 dysregulation to disease and suggests a role for TGFB2 in glaucoma and myopia
Erjavec, Elisa, Angée, Clémentine, Hadjadj, Djihad, Passet, Bruno, David, Pierre, Kostic, Corinne, Dodé, Emmanuel, Zanlonghi, Xavier, Cagnard, Nicolas, Nedelec, Brigitte, Crippa, Sylvain V., Bole-Feysot, Christine, Zarhrate, Mohammed, Creuzet, Sophie, Castille, Johan, Vilotte, Jean-Luc, Calvas, Patrick, Plaisancié, Julie, Chassaing, Nicolas, Kaplan, Josseline, Rozet, Jean-Michel, Fares Taie, Lucas
Published in American journal of human genetics (03.10.2024)
Published in American journal of human genetics (03.10.2024)
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Journal Article
Reorganized 3D Genome Structures Support Transcriptional Regulation in Mouse Spermatogenesis
Luo, Zhengyu, Wang, Xiaorong, Jiang, Hong, Wang, Ruoyu, Chen, Jian, Chen, Yusheng, Xu, Qianlan, Cao, Jun, Gong, Xiaowen, Wu, Ji, Yang, Yungui, Li, Wenbo, Han, Chunsheng, Cheng, C. Yan, Rosenfeld, Michael G., Sun, Fei, Song, Xiaoyuan
Published in iScience (24.04.2020)
Published in iScience (24.04.2020)
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Journal Article
FastSKAT: Sequence kernel association tests for very large sets of markers
Lumley, Thomas, Brody, Jennifer, Peloso, Gina, Morrison, Alanna, Rice, Kenneth
Published in Genetic epidemiology (01.09.2018)
Published in Genetic epidemiology (01.09.2018)
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Journal Article
Genome-Wide DNA Alterations in X-Irradiated Human Gingiva Fibroblasts
Nath, Neetika, Hagenau, Lisa, Weiss, Stefan, Tzvetkova, Ana, Jensen, Lars R., Kaderali, Lars, Port, Matthias, Scherthan, Harry, Kuss, Andreas W.
Published in International journal of molecular sciences (12.08.2020)
Published in International journal of molecular sciences (12.08.2020)
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Journal Article
Genome architecture plasticity underlies DNA replication timing dynamics in cell differentiation
Yu, Wenjun, Zhong, Quan, Wen, Zi, Zhang, Weihan, Huang, Yanrong
Published in Frontiers in genetics (02.09.2022)
Published in Frontiers in genetics (02.09.2022)
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Journal Article
Modeling the critical MCOR-causing deletion in mouse unveils aberrant Sox21 expression in developing and adult iris and ciliary body, and implicates Tgfβ2 in MCOR-associated glaucoma and myopia
Angée, Clémentine, Erjavec, Elisa, Hadjadj, Djihad, Passet, Bruno, David, Pierre, Kostic, Corinne, Dodé, Emmanuel, Zanlonghi, Xavier, Cagnard, Nicolas, Nedelec, Brigitte, Crippa, Sylvain V., Bole-Feysot, Christine, Zarhrate, Mohammed, Creuzet, Sophie, Castille, Johan, Vilotte, Jean-Luc, Calvas, Patrick, Plaisancié, Julie, Chassaing, Nicolas, Kaplan, Josseline, Rozet, Jean-Michel, Taie, Lucas Fares
Published in bioRxiv (17.01.2024)
Published in bioRxiv (17.01.2024)
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Paper
Modeling the critical MCOR-causing deletion in mouse unveils aberrant Sox21 expression in developing and adult iris and ciliary body, and implicates Tgfb2 in MCOR-associated glaucoma and myopia
Angee, Clementine, Erjavec, Elisa, Hadjadj, Djihad, Passet, Bruno, Pierre, David, Kostic, Corinne, Dode, Emmanuel, Zanlonghi, Xavier, Cagnard, Nicolas, Nedelec, Brigitte, Crippa, Sylvain, Bole-Feysot, Christine, Zarhrate, Mohammed, Castille, Johan, Vilotte, Jean-Luc, Calvas, Patrick, Plaisancie, Julie, Chassaing, Nicolas, Kaplan, Josseline, Jean-Michel Rozet, Lucas Fares Taie
Published in bioRxiv (17.01.2024)
Published in bioRxiv (17.01.2024)
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Paper
A single-cell method to map higher-order 3D genome organization in thousands of individual cells reveals structural heterogeneity in mouse ES cells
Arrastia, Mary V, Jachowicz, Joanna W, Ollikainen, Noah, Curtis, Matthew S, Lai, Charlotte, Quinodoz, Sofia, Selck, David A, Guttman, Mitchell, Ismagilov, Rustem F
Published in bioRxiv (12.08.2020)
Published in bioRxiv (12.08.2020)
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Paper
Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation
Pei, Liuling, Huang, Xianhui, Liu, Zhenping, Tian, Xuehan, You, Jiaqi, Li, Jianying, Fang, David D., Lindsey, Keith, Zhu, Longfu, Zhang, Xianlong, Wang, Maojun
Published in Genome Biology (03.02.2022)
Published in Genome Biology (03.02.2022)
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Journal Article
Chromatin domain alterations linked to 3D genome organization in a large cohort of schizophrenia and bipolar disorder brains
Girdhar, Kiran, Hoffman, Gabriel E., Bendl, Jaroslav, Rahman, Samir, Dong, Pengfei, Liao, Will, Hauberg, Mads E., Sloofman, Laura, Brown, Leanne, Devillers, Olivia, Kassim, Bibi S., Wiseman, Jennifer R., Park, Royce, Zharovsky, Elizabeth, Jacobov, Rivky, Flatow, Elie, Kozlenkov, Alexey, Gilgenast, Thomas, Johnson, Jessica S., Couto, Lizette, Peters, Mette A., Phillips-Cremins, Jennifer E., Hahn, Chang-Gyu, Gur, Raquel E., Tamminga, Carol A., Lewis, David A., Haroutunian, Vahram, Dracheva, Stella, Lipska, Barbara K., Marenco, Stefano, Kundakovic, Marija, Fullard, John F., Jiang, Yan, Roussos, Panos, Akbarian, Schahram
Published in Nature neuroscience (01.04.2022)
Published in Nature neuroscience (01.04.2022)
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Journal Article