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eQTL mapping using allele-specific count data is computationally feasible, powerful, and provides individual-specific estimates of genetic effects
Zhabotynsky, Vasyl, Huang, Licai, Little, Paul, Hu, Yi-Juan, Pardo-Manuel de Villena, Fernando, Zou, Fei, Sun, Wei
Published in PLoS genetics (14.03.2022)
Published in PLoS genetics (14.03.2022)
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Journal Article
Annotation of long non-coding RNAs expressed in Collaborative Cross founder mice in response to respiratory virus infection reveals a new class of interferon-stimulated transcripts
Josset, Laurence, Tchitchek, Nicolas, Gralinski, Lisa E, Ferris, Martin T, Eisfeld, Amie J, Green, Richard R, Thomas, Matthew J, Tisoncik-Go, Jennifer, Schroth, Gary P, Kawaoka, Yoshihiro, Pardo-Manuel de Villena, Fernando, Baric, Ralph S, Heise, Mark T, Peng, Xinxia, Katze, Michael G
Published in RNA biology (01.07.2014)
Published in RNA biology (01.07.2014)
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Journal Article
Diversity Outbred Mice at 21: Maintaining Allelic Variation in the Face of Selection
Chesler, Elissa J, Gatti, Daniel M, Morgan, Andrew P, Strobel, Marge, Trepanier, Laura, Oberbeck, Denesa, McWeeney, Shannon, Hitzemann, Robert, Ferris, Martin, McMullan, Rachel, Clayshultle, Amelia, Bell, Timothy A, de Villena, Fernando Pardo-Manuel, Churchill, Gary A
Published in G3 : genes - genomes - genetics (01.12.2016)
Published in G3 : genes - genomes - genetics (01.12.2016)
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Journal Article
Sequence and Structural Diversity of Mouse Y Chromosomes
Morgan, Andrew P, Pardo-Manuel de Villena, Fernando
Published in Molecular biology and evolution (01.12.2017)
Published in Molecular biology and evolution (01.12.2017)
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Journal Article
C57BL/6N Mutation in Cytoplasmic FMRP interacting protein 2 Regulates Cocaine Response
Kumar, Vivek, Kim, Kyungin, Joseph, Chryshanthi, Kourrich, Saïd, Yoo, Seung-Hee, Huang, Hung Chung, Vitaterna, Martha H., de Villena, Fernando Pardo-Manuel, Churchill, Gary, Bonci, Antonello, Takahashi, Joseph S.
Published in Science (American Association for the Advancement of Science) (20.12.2013)
Published in Science (American Association for the Advancement of Science) (20.12.2013)
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Journal Article
Host-pathogen genetic interactions underlie tuberculosis susceptibility in genetically diverse mice
Smith, Clare M, Baker, Richard E, Proulx, Megan K, Mishra, Bibhuti B, Long, Jarukit E, Park, Sae Woong, Lee, Ha-Na, Kiritsy, Michael C, Bellerose, Michelle M, Olive, Andrew J, Murphy, Kenan C, Papavinasasundaram, Kadamba, Boehm, Frederick J, Reames, Charlotte J, Meade, Rachel K, Hampton, Brea K, Linnertz, Colton L, Shaw, Ginger D, Hock, Pablo, Bell, Timothy A, Ehrt, Sabine, Schnappinger, Dirk, Pardo-Manuel de Villena, Fernando, Ferris, Martin T, Ioerger, Thomas R, Sassetti, Christopher M
Published in eLife (03.02.2022)
Published in eLife (03.02.2022)
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Journal Article
Collaborative Cross mice reveal extreme epilepsy phenotypes and genetic loci for seizure susceptibility
Gu, Bin, Shorter, John R., Williams, Lucy H., Bell, Timothy A., Hock, Pablo, Dalton, Katherine A., Pan, Yiyun, Miller, Darla R., Shaw, Ginger D., Philpot, Benjamin D., Pardo‐Manuel de Villena, Fernando
Published in Epilepsia (Copenhagen) (01.09.2020)
Published in Epilepsia (Copenhagen) (01.09.2020)
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Journal Article
The Mouse Universal Genotyping Array: From Substrains to Subspecies
Morgan, Andrew P, Fu, Chen-Ping, Kao, Chia-Yu, Welsh, Catherine E, Didion, John P, Yadgary, Liran, Hyacinth, Leeanna, Ferris, Martin T, Bell, Timothy A, Miller, Darla R, Giusti-Rodriguez, Paola, Nonneman, Randal J, Cook, Kevin D, Whitmire, Jason K, Gralinski, Lisa E, Keller, Mark, Attie, Alan D, Churchill, Gary A, Petkov, Petko, Sullivan, Patrick F, Brennan, Jennifer R, McMillan, Leonard, Pardo-Manuel de Villena, Fernando
Published in G3 : genes - genomes - genetics (01.02.2016)
Published in G3 : genes - genomes - genetics (01.02.2016)
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Journal Article
Subspecific origin and haplotype diversity in the laboratory mouse
Yang, Hyuna, Wang, Jeremy R, Didion, John P, Buus, Ryan J, Bell, Timothy A, Welsh, Catherine E, Bonhomme, François, Yu, Alex Hon-Tsen, Nachman, Michael W, Pialek, Jaroslav, Tucker, Priscilla, Boursot, Pierre, McMillan, Leonard, Churchill, Gary A, de Villena, Fernando Pardo-Manuel
Published in Nature genetics (01.07.2011)
Published in Nature genetics (01.07.2011)
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Journal Article
High-Resolution Sex-Specific Linkage Maps of the Mouse Reveal Polarized Distribution of Crossovers in Male Germline
Liu, Eric Yi, Morgan, Andrew P, Chesler, Elissa J, Wang, Wei, Churchill, Gary A, Pardo-Manuel de Villena, Fernando
Published in Genetics (Austin) (01.05.2014)
Published in Genetics (Austin) (01.05.2014)
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Journal Article
Differential metabolism of inorganic arsenic in mice from genetically diverse Collaborative Cross strains
Stýblo, Miroslav, Douillet, Christelle, Bangma, Jacqueline, Eaves, Lauren A., de Villena, Fernando Pardo-Manuel, Fry, Rebecca
Published in Archives of toxicology (01.10.2019)
Published in Archives of toxicology (01.10.2019)
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Journal Article
Functionally Overlapping Variants Control Tuberculosis Susceptibility in Collaborative Cross Mice
Smith, Clare M., Proulx, Megan K., Lai, Rocky, Kiritsy, Michael C., Bell, Timothy A., Hock, Pablo, Pardo-Manuel de Villena, Fernando, Ferris, Martin T., Baker, Richard E., Behar, Samuel M., Sassetti, Christopher M.
Published in mBio (26.11.2019)
Published in mBio (26.11.2019)
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Journal Article
Characterization of genetically complex Collaborative Cross mouse strains that model divergent locomotor activating and reinforcing properties of cocaine
Schoenrock, Sarah A., Kumar, Padam, Gómez-A, Alexander, Dickson, Price E., Kim, Sam-Moon, Bailey, Lauren, Neira, Sofia, Riker, Kyle D., Farrington, Joseph, Gaines, Christiann H., Khan, Saad, Wilcox, Troy D., Roy, Tyler A., Leonardo, Michael R., Olson, Ashley A., Gagnon, Leona H., Philip, Vivek M., Valdar, William, de Villena, Fernando Pardo-Manuel, Jentsch, James D., Logan, Ryan W., McClung, Colleen A., Robinson, Donita L., Chesler, Elissa J., Tarantino, Lisa M.
Published in Psychopharmacology (01.04.2020)
Published in Psychopharmacology (01.04.2020)
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Journal Article
Immune Predictors of Mortality After Ribonucleic Acid Virus Infection
Graham, Jessica B, Swarts, Jessica L, Menachery, Vineet D, Gralinski, Lisa E, Schäfer, Alexandra, Plante, Kenneth S, Morrison, Clayton R, Voss, Kathleen M, Green, Richard, Choonoo, Gabrielle, Jeng, Sophia, Miller, Darla R, Mooney, Michael A, McWeeney, Shannon K, Ferris, Martin T, Pardo-Manuel de Villena, Fernando, Gale, Michael, Heise, Mark T, Baric, Ralph S, Lund, Jennifer M
Published in The Journal of infectious diseases (15.03.2020)
Published in The Journal of infectious diseases (15.03.2020)
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Journal Article
Quantitative trait mapping in Diversity Outbred mice identifies two genomic regions associated with heart size
Shorter, John R., Huang, Wei, Beak, Ju Youn, Hua, Kunjie, Gatti, Daniel M., de Villena, Fernando Pardo-Manuel, Pomp, Daniel, Jensen, Brian C.
Published in Mammalian genome (01.02.2018)
Published in Mammalian genome (01.02.2018)
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Journal Article
Wild Mouse Gut Microbiota Promotes Host Fitness and Improves Disease Resistance
Rosshart, Stephan P., Vassallo, Brian G., Angeletti, Davide, Hutchinson, Diane S., Morgan, Andrew P., Takeda, Kazuyo, Hickman, Heather D., McCulloch, John A., Badger, Jonathan H., Ajami, Nadim J., Trinchieri, Giorgio, Pardo-Manuel de Villena, Fernando, Yewdell, Jonathan W., Rehermann, Barbara
Published in Cell (16.11.2017)
Published in Cell (16.11.2017)
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Journal Article
Whole Genome Sequencing and Progress Toward Full Inbreeding of the Mouse Collaborative Cross Population
Shorter, John R, Najarian, Maya L, Bell, Timothy A, Blanchard, Matthew, Ferris, Martin T, Hock, Pablo, Kashfeen, Anwica, Kirchoff, Kathryn E, Linnertz, Colton L, Sigmon, J Sebastian, Miller, Darla R, McMillan, Leonard, Pardo-Manuel de Villena, Fernando
Published in G3 : genes - genomes - genetics (01.05.2019)
Published in G3 : genes - genomes - genetics (01.05.2019)
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Journal Article
Genetic architecture of atherosclerosis dissected by QTL analyses in three F2 intercrosses of apolipoprotein E-null mice on C57BL6/J, DBA/2J and 129S6/SvEvTac backgrounds
Makhanova, Natalia, Morgan, Andrew P., Kayashima, Yukako, Makhanov, Andrei, Hiller, Sylvia, Zhilicheva, Svetlana, Xu, Longquan, Pardo-Manuel de Villena, Fernando, Maeda, Nobuyo
Published in PloS one (24.08.2017)
Published in PloS one (24.08.2017)
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Journal Article
Long‐term exercise in mice has sex‐dependent benefits on body composition and metabolism during aging
McMullan, Rachel C., Kelly, Scott A., Hua, Kunjie, Buckley, Brian K., Faber, James E., Pardo‐Manuel de Villena, Fernando, Pomp, Daniel
Published in Physiological reports (01.11.2016)
Published in Physiological reports (01.11.2016)
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Journal Article
The FaceBase Consortium: A comprehensive program to facilitate craniofacial research
Hochheiser, Harry, Aronow, Bruce J., Artinger, Kristin, Beaty, Terri H., Brinkley, James F., Chai, Yang, Clouthier, David, Cunningham, Michael L., Dixon, Michael, Donahue, Leah Rae, Fraser, Scott E., Hallgrimsson, Benedikt, Iwata, Junichi, Klein, Ophir, Marazita, Mary L., Murray, Jeffrey C., Murray, Stephen, de Villena, Fernando Pardo-Manuel, Postlethwait, John, Potter, Steven, Shapiro, Linda, Spritz, Richard, Visel, Axel, Weinberg, Seth M., Trainor, Paul A.
Published in Developmental biology (15.07.2011)
Published in Developmental biology (15.07.2011)
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Journal Article