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Bulk tissue cell type deconvolution with multi-subject single-cell expression reference
Wang, Xuran, Park, Jihwan, Susztak, Katalin, Zhang, Nancy R., Li, Mingyao
Published in Nature communications (22.01.2019)
Published in Nature communications (22.01.2019)
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Journal Article
Bulk brain tissue cell type deconvolution with bias correction for single‐nuclei RNA‐seq
O'Neill, Nicholas K, Hu, Junming, Stein, Thor D., Zhang, Xiaoling, Farrer, Lindsay A.
Published in Alzheimer's & dementia (01.12.2022)
Published in Alzheimer's & dementia (01.12.2022)
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Journal Article
imply : improving cell-type deconvolution accuracy using personalized reference profiles
Meng, Guanqun, Pan, Yue, Tang, Wen, Zhang, Lijun, Cui, Ying, Schumacher, Fredrick R, Wang, Ming, Wang, Rui, He, Sijia, Krischer, Jeffrey, Li, Qian, Feng, Hao
Published in bioRxiv (29.09.2023)
Published in bioRxiv (29.09.2023)
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Systemic Markers of Adaptive and Innate Immunity Are Associated with Chronic Obstructive Pulmonary Disease Severity and Spirometric Disease Progression
Halper-Stromberg, Eitan, Yun, Jeong H., Parker, Margaret M., Singer, Ruth Tal, Gaggar, Amit, Silverman, Edwin K., Leach, Sonia, Bowler, Russell P., Castaldi, Peter J.
Published in American journal of respiratory cell and molecular biology (01.04.2018)
Published in American journal of respiratory cell and molecular biology (01.04.2018)
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Journal Article
Transcriptional Alterations in Dorsolateral Prefrontal Cortex and Nucleus Accumbens Implicate Neuroinflammation and Synaptic Remodeling in Opioid Use Disorder
Seney, Marianne L., Kim, Sam-Moon, Glausier, Jill R., Hildebrand, Mariah A., Xue, Xiangning, Zong, Wei, Wang, Jiebiao, Shelton, Micah A., Phan, BaDoi N., Srinivasan, Chaitanya, Pfenning, Andreas R., Tseng, George C., Lewis, David A., Freyberg, Zachary, Logan, Ryan W.
Published in Biological psychiatry (1969) (15.10.2021)
Published in Biological psychiatry (1969) (15.10.2021)
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Genome-Scale Methylation Analysis Identifies Immune Profiles and Age Acceleration Associations with Bladder Cancer Outcomes
Chen, Ji-Qing, Salas, Lucas A., Wiencke, John K., Koestler, Devin C., Molinaro, Annette M., Andrew, Angeline S., Seigne, John D., Karagas, Margaret R., Kelsey, Karl T., Christensen, Brock C.
Published in Cancer epidemiology, biomarkers & prevention (02.10.2023)
Published in Cancer epidemiology, biomarkers & prevention (02.10.2023)
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Journal Article
Multi-objective optimization identifies a specific and interpretable COVID-19 host response signature
Cappuccio, Antonio, Chawla, Daniel G., Chen, Xi, Rubenstein, Aliza B., Cheng, Wan Sze, Mao, Weiguang, Burke, Thomas W., Tsalik, Ephraim L., Petzold, Elizabeth, Henao, Ricardo, McClain, Micah T., Woods, Christopher W., Chikina, Maria, Troyanskaya, Olga G., Sealfon, Stuart C., Kleinstein, Steven H., Zaslavsky, Elena
Published in Cell systems (21.12.2022)
Published in Cell systems (21.12.2022)
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Journal Article
Changes in expression levels of erythrocyte and immune-related genes are associated with high altitude polycythemia
Feng, Siwei, Wei, Gang, Yang, Xuelin, Zhang, Zhiying, Qu, Jingfeng, Wang, Donglan, Zhou, Tian, Ni, Ting, Liu, Lijun, Kang, Longli
Published in BMC medical genomics (28.07.2023)
Published in BMC medical genomics (28.07.2023)
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Journal Article
Abstract 2114: Differences In The Circulating Transcriptome Between Peripheral Artery Disease And Coronary Artery Disease
Ni, Richard, Muller, Matthew, Ruggles, Kelly, Barrett, Tessa, Berger, Jeffrey
Published in Arteriosclerosis, thrombosis, and vascular biology (01.05.2024)
Published in Arteriosclerosis, thrombosis, and vascular biology (01.05.2024)
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Journal Article
The Genome-Wide Impact of Trisomy 21 on DNA Methylation and Its Implications for Hematologic Malignancies
Wiemels, Joseph L., Muskens, Ivo S, Li, Shaobo, Pandey, Priyatama, Roy, Ritu, Hansen, Helen M, Siegmund, Kimberly D, Mueller, Beth A, Ma, Xiaomei, Metayer, Catherine, de Smith, Adam J
Published in Blood (13.11.2019)
Published in Blood (13.11.2019)
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Journal Article
Transcriptome characterization of the motor cortex suggests microglial‐related key events due to TDP‐43 aberrant inclusions
Dols‐Icardo, Oriol, Montal, Victor, Dolcet, Sonia Sirisi, López‐Pernas, Gema, Cervera‐Carles, Laura, Querol‐Vilaseca, Marta, Muñoz, Laia, Molina‐Porcel, Laura, Pegueroles, Jordi, Turón‐Sans, Janina, Blesa, Rafael, Lleó, Alberto, Fortea, Juan, Rojas‐García, Ricard, Clarimon, Jordi
Published in Alzheimer's & dementia (01.12.2020)
Published in Alzheimer's & dementia (01.12.2020)
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Journal Article
Novel Insights into Post-Myocardial Infarction Cardiac Remodeling through Algorithmic Detection of Cell-Type Composition Shifts
Gural, Brian, Kirkland, Logan, Hockett, Abbey, Sandroni, Peyton, Zhang, Jiandong, Rosa-Garrido, Manuel, Swift, Samantha K, Chapski, Douglas, Flinn, Michael A, O'Meara, Caitlin C, Vondriska, Thomas M, Patterson, Michaela, Jensen, Brian C, Rau, Christoph D
Published in bioRxiv (10.08.2024)
Published in bioRxiv (10.08.2024)
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Systemic Markers of Adaptive and Innate Immunity Are Associated with COPD Severity and Spirometric Disease Progression
Halper-Stromberg, Eitan, Yun, Jeong H, Parker, Margaret M, Tal-Singer, Ruth M, Gaggar, Amit, Silverman, Edwin K, Leach, Sonia, Bowler, Russell P, Castaldi, Peter J
Published in bioRxiv (14.11.2017)
Published in bioRxiv (14.11.2017)
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