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Human gut microbiota in obesity and after gastric bypass
Zhang, Husen, DiBaise, John K, Zuccolo, Andrea, Kudrna, Dave, Braidotti, Michele, Yu, Yeisoo, Parameswaran, Prathap, Crowell, Michael D, Wing, Rod, Rittmann, Bruce E, Krajmalnik-Brown, Rosa
Published in Proceedings of the National Academy of Sciences - PNAS (17.02.2009)
Published in Proceedings of the National Academy of Sciences - PNAS (17.02.2009)
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Journal Article
Epigenetic patterns within the haplotype phased fig (Ficus carica L.) genome
Usai, Gabriele, Mascagni, Flavia, Giordani, Tommaso, Vangelisti, Alberto, Bosi, Emanuele, Zuccolo, Andrea, Ceccarelli, Marilena, King, Robert, Hassani‐Pak, Keywan, Zambrano, Liceth S., Cavallini, Andrea, Natali, Lucia
Published in The Plant journal : for cell and molecular biology (01.05.2020)
Published in The Plant journal : for cell and molecular biology (01.05.2020)
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Journal Article
The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication
Wang, Muhua, Yu, Yeisoo, Haberer, Georg, Marri, Pradeep Reddy, Fan, Chuanzhu, Goicoechea, Jose Luis, Zuccolo, Andrea, Song, Xiang, Kudrna, Dave, Ammiraju, Jetty S S, Cossu, Rosa Maria, Maldonado, Carlos, Chen, Jinfeng, Lee, Seunghee, Sisneros, Nick, de Baynast, Kristi, Golser, Wolfgang, Wissotski, Marina, Kim, Woojin, Sanchez, Paul, Ndjiondjop, Marie-Noelle, Sanni, Kayode, Long, Manyuan, Carney, Judith, Panaud, Olivier, Wicker, Thomas, Machado, Carlos A, Chen, Mingsheng, Mayer, Klaus F X, Rounsley, Steve, Wing, Rod A
Published in Nature genetics (01.09.2014)
Published in Nature genetics (01.09.2014)
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Journal Article
Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice
Zhou, Yong, Yu, Zhichao, Chebotarov, Dmytro, Chougule, Kapeel, Lu, Zhenyuan, Rivera, Luis F., Kathiresan, Nagarajan, Al-Bader, Noor, Mohammed, Nahed, Alsantely, Aseel, Mussurova, Saule, Santos, João, Thimma, Manjula, Troukhan, Maxim, Fornasiero, Alice, Green, Carl D., Copetti, Dario, Kudrna, David, Llaca, Victor, Lorieux, Mathias, Zuccolo, Andrea, Ware, Doreen, McNally, Kenneth, Zhang, Jianwei, Wing, Rod A.
Published in Nature communications (21.03.2023)
Published in Nature communications (21.03.2023)
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Journal Article
A platinum standard pan-genome resource that represents the population structure of Asian rice
Zhou, Yong, Chebotarov, Dmytro, Kudrna, Dave, Llaca, Victor, Lee, Seunghee, Rajasekar, Shanmugam, Mohammed, Nahed, Al-Bader, Noor, Sobel-Sorenson, Chandler, Parakkal, Praveena, Arbelaez, Lady Johanna, Franco, Natalia, Alexandrov, Nickolai, Hamilton, N. Ruaraidh Sackville, Leung, Hei, Mauleon, Ramil, Lorieux, Mathias, Zuccolo, Andrea, McNally, Kenneth, Zhang, Jianwei, Wing, Rod A.
Published in Scientific data (07.04.2020)
Published in Scientific data (07.04.2020)
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Journal Article
Chromosome-scale pearl millet genomes reveal CLAMT1b as key determinant of strigolactone pattern and Striga susceptibility
Kuijer, Hendrik N. J., Wang, Jian You, Bougouffa, Salim, Abrouk, Michael, Jamil, Muhammad, Incitti, Roberto, Alam, Intikhab, Balakrishna, Aparna, Alvarez, Derry, Votta, Cristina, Chen, Guan-Ting Erica, Martínez, Claudio, Zuccolo, Andrea, Berqdar, Lamis, Sioud, Salim, Fiorilli, Valentina, de Lera, Angel R., Lanfranco, Luisa, Gojobori, Takashi, Wing, Rod A., Krattinger, Simon G., Gao, Xin, Al-Babili, Salim
Published in Nature communications (12.08.2024)
Published in Nature communications (12.08.2024)
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Journal Article
DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses
Wicker, Thomas, Yu, Yeisoo, Haberer, Georg, Mayer, Klaus F. X., Marri, Pradeep Reddy, Rounsley, Steve, Chen, Mingsheng, Zuccolo, Andrea, Panaud, Olivier, Wing, Rod A., Roffler, Stefan
Published in Nature communications (07.09.2016)
Published in Nature communications (07.09.2016)
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Journal Article
PacBio genome assembly of Olea europaea L. subsp. europaea cultivars Frantoio and Leccino
Sebastiani, Luca, Sarfraz, Iqra, Francini, Alessandra, Celii, Mirko, Wing, Rod A., Zuccolo, Andrea
Published in Scientific data (01.07.2025)
Published in Scientific data (01.07.2025)
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Journal Article
A high-performance computational workflow to accelerate GATK SNP detection across a 25-genome dataset
Zhou, Yong, Kathiresan, Nagarajan, Yu, Zhichao, Rivera, Luis F., Yang, Yujian, Thimma, Manjula, Manickam, Keerthana, Chebotarov, Dmytro, Mauleon, Ramil, Chougule, Kapeel, Wei, Sharon, Gao, Tingting, Green, Carl D., Zuccolo, Andrea, Xie, Weibo, Ware, Doreen, Zhang, Jianwei, McNally, Kenneth L., Wing, Rod A.
Published in BMC biology (25.01.2024)
Published in BMC biology (25.01.2024)
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Journal Article
LTR Retrotransposons Show Low Levels of Unequal Recombination and High Rates of Intraelement Gene Conversion in Large Plant Genomes
Cossu, Rosa Maria, Casola, Claudio, Giacomello, Stefania, Vidalis, Amaryllis, Scofield, Douglas G, Zuccolo, Andrea
Published in Genome biology and evolution (01.12.2017)
Published in Genome biology and evolution (01.12.2017)
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Journal Article
The gyrfalcon (Falco rusticolus) genome
Zuccolo, Andrea, Mfarrej, Sara, Celii, Mirko, Mussurova, Saule, Rivera, Luis F, Llaca, Victor, Mohammed, Nahed, Pain, Arnab, Alrefaei, Abdulmajeed Fahad, Alrefaei, Abdulwahed Fahad, Wing, Rod A
Published in G3 : genes - genomes - genetics (09.03.2023)
Published in G3 : genes - genomes - genetics (09.03.2023)
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Journal Article
Evolution of gene structure in the conifer Picea glauca: a comparative analysis of the impact of intron size
Stival Sena, Juliana, Giguère, Isabelle, Boyle, Brian, Rigault, Philippe, Birol, Inanc, Zuccolo, Andrea, Ritland, Kermit, Ritland, Carol, Bohlmann, Joerg, Jones, Steven, Bousquet, Jean, Mackay, John
Published in BMC plant biology (16.04.2014)
Published in BMC plant biology (16.04.2014)
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Journal Article
Rice structural variation: a comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza
Hurwitz, Bonnie L, Kudrna, Dave, Yu, Yeisoo, Sebastian, Aswathy, Zuccolo, Andrea, Jackson, Scott A, Ware, Doreen, Wing, Rod A, Stein, Lincoln
Published in The Plant journal : for cell and molecular biology (01.09.2010)
Published in The Plant journal : for cell and molecular biology (01.09.2010)
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Journal Article
A draft physical map of a D-genome cotton species (Gossypium raimondii)
Lin, Lifeng, Pierce, Gary J, Bowers, John E, Estill, James C, Compton, Rosana O, Rainville, Lisa K, Kim, Changsoo, Lemke, Cornelia, Rong, Junkang, Tang, Haibao, Wang, Xiyin, Braidotti, Michele, Chen, Amy H, Chicola, Kristen, Collura, Kristi, Epps, Ethan, Golser, Wolfgang, Grover, Corrinne, Ingles, Jennifer, Karunakaran, Santhosh, Kudrna, Dave, Olive, Jaime, Tabassum, Nabila, Um, Eareana, Wissotski, Marina, Yu, Yeisoo, Zuccolo, Andrea, ur Rahman, Mehboob, Peterson, Daniel G, Wing, Rod A, Wendel, Jonathan F, Paterson, Andrew H
Published in BMC genomics (22.06.2010)
Published in BMC genomics (22.06.2010)
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Journal Article
The Amborella genome: an evolutionary reference for plant biology
Soltis, Douglas E, Albert, Victor A, Leebens-Mack, Jim, Palmer, Jeffrey D, Wing, Rod A, dePamphilis, Claude W, Ma, Hong, Carlson, John E, Altman, Naomi, Kim, Sangtae, Wall, P Kerr, Zuccolo, Andrea, Soltis, Pamela S
Published in Genome biology (01.01.2008)
Published in Genome biology (01.01.2008)
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Journal Article
Complete Genome Sequence of Campylobacter jejuni Strain S3
Cooper, Kerry K., Cooper, Margarethe A., Zuccolo, Andrea, Law, Bibiana, Joens, Lynn A.
Published in Journal of Bacteriology (01.03.2011)
Published in Journal of Bacteriology (01.03.2011)
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Journal Article
Construction of a nurse shark (Ginglymostoma cirratum) bacterial artificial chromosome (BAC) library and a preliminary genome survey
Luo, Meizhong, Kim, HyeRan, Kudrna, Dave, Sisneros, Nicholas B, Lee, So-Jeong, Mueller, Christopher, Collura, Kristi, Zuccolo, Andrea, Buckingham, E Bryan, Grim, Suzanne M, Yanagiya, Kazuyo, Inoko, Hidetoshi, Shiina, Takashi, Flajnik, Martin F, Wing, Rod A, Ohta, Yuko
Published in BMC Genomics (03.05.2006)
Published in BMC Genomics (03.05.2006)
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Journal Article