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Chromatin accessibility landscape and regulatory network of high-altitude hypoxia adaptation
Xin, Jingxue, Zhang, Hui, He, Yaoxi, Duren, Zhana, Bai, Caijuan, Chen, Lang, Luo, Xin, Yan, Dong-Sheng, Zhang, Chaoyu, Zhu, Xiang, Yuan, Qiuyue, Feng, Zhanying, Cui, Chaoying, Qi, Xuebin, Ouzhuluobu, Wong, Wing Hung, Wang, Yong, Su, Bing
Published in Nature communications (01.10.2020)
Published in Nature communications (01.10.2020)
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Journal Article
Regulatory analysis of single cell multiome gene expression and chromatin accessibility data with scREG
Duren, Zhana, Chang, Fengge, Naqing, Fnu, Xin, Jingxue, Liu, Qiao, Wong, Wing Hung
Published in Genome Biology (16.05.2022)
Published in Genome Biology (16.05.2022)
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Journal Article
Sc-compReg enables the comparison of gene regulatory networks between conditions using single-cell data
Duren, Zhana, Lu, Wenhui Sophia, Arthur, Joseph G., Shah, Preyas, Xin, Jingxue, Meschi, Francesca, Li, Miranda Lin, Nemec, Corey M., Yin, Yifeng, Wong, Wing Hung
Published in Nature communications (06.08.2021)
Published in Nature communications (06.08.2021)
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Journal Article
Modeling combinatorial regulation from single-cell multi-omics provides regulatory units underpinning cell type landscape using cRegulon
Feng, Zhanying, Chen, Xi, Duren, Zhana, Xin, Jingxue, Miao, Hao, Yuan, Qiuyue, Wang, Yong, Wong, Wing Hung
Published in Genome Biology (24.07.2025)
Published in Genome Biology (24.07.2025)
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Journal Article
Heritability enrichment in context-specific regulatory networks improves phenotype-relevant tissue identification
Feng, Zhanying, Duren, Zhana, Xin, Jingxue, Yuan, Qiuyue, He, Yaoxi, Su, Bing, Wong, Wing Hung, Wang, Yong
Published in eLife (16.12.2022)
Published in eLife (16.12.2022)
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Journal Article
TFAP2C- and p63-Dependent Networks Sequentially Rearrange Chromatin Landscapes to Drive Human Epidermal Lineage Commitment
Li, Lingjie, Wang, Yong, Torkelson, Jessica L., Shankar, Gautam, Pattison, Jillian M., Zhen, Hanson H., Fang, Fengqin, Duren, Zhana, Xin, Jingxue, Gaddam, Sadhana, Melo, Sandra P., Piekos, Samantha N., Li, Jiang, Liaw, Eric J., Chen, Lang, Li, Rui, Wernig, Marius, Wong, Wing H., Chang, Howard Y., Oro, Anthony E.
Published in Cell stem cell (07.02.2019)
Published in Cell stem cell (07.02.2019)
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Journal Article
Drosophila TRF2 and TAF9 regulate lipid droplet size and phospholipid fatty acid composition
Fan, Wei, Lam, Sin Man, Xin, Jingxue, Yang, Xiao, Liu, Zhonghua, Liu, Yuan, Wang, Yong, Shui, Guanghou, Huang, Xun
Published in PLoS genetics (08.03.2017)
Published in PLoS genetics (08.03.2017)
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Journal Article
Reusability report: Compressing regulatory networks to vectors for interpreting gene expression and genetic variants
Zeng, Wanwen, Xin, Jingxue, Jiang, Rui, Wang, Yong
Published in Nature machine intelligence (01.07.2021)
Published in Nature machine intelligence (01.07.2021)
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Journal Article
ZokorDB: tissue specific regulatory network annotation for non-coding elements of plateau zokor
Xin, Jingxue, Hao, Junjun, Chen, Lang, Zhang, Tao, Li, Lei, Chen, Luonan, Zhao, Wenmin, Lu, Xuemei, Shi, Peng, Wang, Yong
Published in Quantitative biology (01.03.2020)
Published in Quantitative biology (01.03.2020)
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Journal Article
Time course regulatory analysis based on paired expression and chromatin accessibility data
Duren, Zhana, Chen, Xi, Xin, Jingxue, Wang, Yong, Wong, Wing Hung
Published in Genome research (01.04.2020)
Published in Genome research (01.04.2020)
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Journal Article
Human stem cells with in vivo high plasticity generated by cell–cell communication
Li, Shaowei, Chen, Xi, Xin, Jingxue, Liu, Bowen, Liu, Bo, Hu, Min, Wong, Wing Hung
Published in Proceedings of the National Academy of Sciences - PNAS (18.03.2025)
Published in Proceedings of the National Academy of Sciences - PNAS (18.03.2025)
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Journal Article
Lipid-gene regulatory network reveals coregulations of triacylglycerol with phosphatidylinositol/lysophosphatidylinositol and with hexosyl-ceramide
Wang, Wei, Xin, Jingxue, Yang, Xiao, Lam, Sin Man, Shui, Guanghou, Wang, Yong, Huang, Xun
Published in Biochimica et biophysica acta. Molecular and cell biology of lipids (01.02.2019)
Published in Biochimica et biophysica acta. Molecular and cell biology of lipids (01.02.2019)
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Journal Article
Genetic adaptation of skin pigmentation in highland Tibetans
Yang, Zhaohui, Bai, Caijuan, Pu, Youwei, Kong, Qinghong, Guo, Yongbo, Ouzhuluobud, Gengdengh, Liu, Xuyang, Zhao, Qi, Qiu, Zhichao, Zheng, Wangshan, He, Yaoxi, Lin, Yihan, Deng, Lian, Zhang, Chao, Xu, Shuhua, Peng, Yi, Xiang, Kun, Zhang, Xiaoming, Baimayangji, Cirenyangji, Cui, Chaoying, Baimakangzhuo, Gonggalanzi, Bianbad, Pan, Yongyue, Xin, Jingxue, Wang, Yong, Liu, Shiming, Wang, Liangbang, Guo, Hengliang, Feng, Zhenzhen, Wang, Shaobo, Shi, Hong, Jiang, Binghua, Wu, Tianyi, Qi, Xuebin, Su, Bing
Published in Proceedings of the National Academy of Sciences - PNAS (04.10.2022)
Published in Proceedings of the National Academy of Sciences - PNAS (04.10.2022)
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Journal Article
Data integration and inference of gene regulation using single-cell temporal multimodal data with scTIE
Lin, Yingxin, Wu, Tung-Yu, Chen, Xi, Wan, Sheng, Chao, Brian, Xin, Jingxue, Yang, Jean Y.H., Wong, Wing H., Wang, Y.X. Rachel
Published in Genome research (01.01.2024)
Published in Genome research (01.01.2024)
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Journal Article
scTIE: data integration and inference of gene regulation using single-cell temporal multimodal data
Lin, Yingxin, Wu, Tung-Yu, Chen, Xi, Wan, Sheng, Chao, Brian, Xin, Jingxue, Yang, Jean Y H, Wong, Wing H, Wang, Y X Rachel
Published in bioRxiv (22.05.2023)
Published in bioRxiv (22.05.2023)
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Journal Article
Paper
Ice radar investigation at Dome A, East Antarctica: Ice thickness and subglacial topography
Cui, XiangBin, Sun, Bo, Tian, Gang, Tang, XueYuan, Zhang, XiangPei, Jiang, YunYun, Guo, JingXue, Li, Xin
Published in Chinese science bulletin (01.02.2010)
Published in Chinese science bulletin (01.02.2010)
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Journal Article