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Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis
Johnson, Jethro S., Spakowicz, Daniel J., Hong, Bo-Young, Petersen, Lauren M., Demkowicz, Patrick, Chen, Lei, Leopold, Shana R., Hanson, Blake M., Agresta, Hanako O., Gerstein, Mark, Sodergren, Erica, Weinstock, George M.
Published in Nature communications (06.11.2019)
Published in Nature communications (06.11.2019)
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Journal Article
Intermittent Fasting Confers Protection in CNS Autoimmunity by Altering the Gut Microbiota
Cignarella, Francesca, Cantoni, Claudia, Ghezzi, Laura, Salter, Amber, Dorsett, Yair, Chen, Lei, Phillips, Daniel, Weinstock, George M., Fontana, Luigi, Cross, Anne H., Zhou, Yanjiao, Piccio, Laura
Published in Cell metabolism (05.06.2018)
Published in Cell metabolism (05.06.2018)
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Journal Article
The Integrative Human Microbiome Project
Proctor, Lita M., Creasy, Heather H., Fettweis, Jennifer M., Lloyd-Price, Jason, Mahurkar, Anup, Zhou, Wenyu, Buck, Gregory A., Snyder, Michael P., Strauss, Jerome F., Weinstock, George M., White, Owen, Huttenhower, Curtis
Published in Nature (London) (01.05.2019)
Published in Nature (London) (01.05.2019)
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Journal Article
Deciphering functional redundancy in the human microbiome
Tian, Liang, Wang, Xu-Wen, Wu, Ang-Kun, Fan, Yuhang, Friedman, Jonathan, Dahlin, Amber, Waldor, Matthew K., Weinstock, George M., Weiss, Scott T., Liu, Yang-Yu
Published in Nature communications (04.12.2020)
Published in Nature communications (04.12.2020)
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Journal Article
Gut bacteria dysbiosis and necrotising enterocolitis in very low birthweight infants: a prospective case-control study
Warner, Barbara B, Deych, Elena, Zhou, Yanjiao, Hall-Moore, Carla, Weinstock, George M, Sodergren, Erica, Shaikh, Nurmohammad, Hoffmann, Julie A, Linneman, Laura A, Hamvas, Aaron, Khanna, Geetika, Rouggly-Nickless, Lucina C, Ndao, I Malick, Shands, Berkley A, Escobedo, Marilyn, Sullivan, Janice E, Radmacher, Paula G, Shannon, William D, Tarr, Phillip I
Published in The Lancet (British edition) (07.05.2016)
Published in The Lancet (British edition) (07.05.2016)
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Journal Article
Genomic variation landscape of the human gut microbiome
Schloissnig, Siegfried, Arumugam, Manimozhiyan, Sunagawa, Shinichi, Mitreva, Makedonka, Tap, Julien, Zhu, Ana, Waller, Alison, Mende, Daniel R., Kultima, Jens Roat, Martin, John, Kota, Karthik, Sunyaev, Shamil R., Weinstock, George M., Bork, Peer
Published in Nature (London) (03.01.2013)
Published in Nature (London) (03.01.2013)
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Journal Article
The upper-airway microbiota and loss of asthma control among asthmatic children
Zhou, Yanjiao, Jackson, Daniel, Bacharier, Leonard B., Mauger, David, Boushey, Homer, Castro, Mario, Durack, Juliana, Huang, Yvonne, Lemanske, Robert F., Storch, Gregory A., Weinstock, George M., Wylie, Kristine, Covar, Ronina, Fitzpatrick, Anne M., Phipatanakul, Wanda, Robison, Rachel G., Beigelman, Avraham
Published in Nature communications (16.12.2019)
Published in Nature communications (16.12.2019)
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Journal Article
VarScan: variant detection in massively parallel sequencing of individual and pooled samples
Koboldt, Daniel C., Chen, Ken, Wylie, Todd, Larson, David E., McLellan, Michael D., Mardis, Elaine R., Weinstock, George M., Wilson, Richard K., Ding, Li
Published in Bioinformatics (01.09.2009)
Published in Bioinformatics (01.09.2009)
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Journal Article
A prospective microbiome‐wide association study of food sensitization and food allergy in early childhood
Savage, Jessica H., Lee‐Sarwar, Kathleen A., Sordillo, Joanne, Bunyavanich, Supinda, Zhou, Yanjiao, O'Connor, George, Sandel, Megan, Bacharier, Leonard B., Zeiger, Robert, Sodergren, Erica, Weinstock, George M., Gold, Diane R., Weiss, Scott T., Litonjua, Augusto A.
Published in Allergy (Copenhagen) (01.01.2018)
Published in Allergy (Copenhagen) (01.01.2018)
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Journal Article
Community characteristics of the gut microbiomes of competitive cyclists
Petersen, Lauren M., Bautista, Eddy J., Nguyen, Hoan, Hanson, Blake M., Chen, Lei, Lek, Sai H., Sodergren, Erica, Weinstock, George M.
Published in Microbiome (10.08.2017)
Published in Microbiome (10.08.2017)
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Journal Article
Patterned progression of bacterial populations in the premature infant gut
La Rosa, Patricio S., Warner, Barbara B., Zhou, Yanjiao, Weinstock, George M., Sodergren, Erica, Hall-Moore, Carla M., Stevens, Harold J., Bennett, William E., Shaikh, Nurmohammad, Linneman, Laura A., Hoffmann, Julie A., Hamvas, Aaron, Deych, Elena, Shands, Berkley A., Shannon, William D., Tarr, Phillip I.
Published in Proceedings of the National Academy of Sciences - PNAS (26.08.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (26.08.2014)
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Journal Article
Sequence Analysis of the Human Virome in Febrile and Afebrile Children
Wylie, Kristine M., Mihindukulasuriya, Kathie A., Sodergren, Erica, Weinstock, George M., Storch, Gregory A.
Published in PloS one (13.06.2012)
Published in PloS one (13.06.2012)
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Journal Article
Comparison of the Respiratory Microbiome in Healthy Nonsmokers and Smokers
Morris, Alison, Beck, James M., Schloss, Patrick D., Campbell, Thomas B., Crothers, Kristina, Curtis, Jeffrey L., Flores, Sonia C., Fontenot, Andrew P., Ghedin, Elodie, Huang, Laurence, Jablonski, Kathleen, Kleerup, Eric, Lynch, Susan V., Sodergren, Erica, Twigg, Homer, Young, Vincent B., Bassis, Christine M., Venkataraman, Arvind, Schmidt, Thomas M., Weinstock, George M.
Published in American journal of respiratory and critical care medicine (15.05.2013)
Published in American journal of respiratory and critical care medicine (15.05.2013)
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Journal Article
Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment
Nobel, Yael R., Cox, Laura M., Kirigin, Francis F., Bokulich, Nicholas A., Yamanishi, Shingo, Teitler, Isabel, Chung, Jennifer, Sohn, Jiho, Barber, Cecily M., Goldfarb, David S., Raju, Kartik, Abubucker, Sahar, Zhou, Yanjiao, Ruiz, Victoria E., Li, Huilin, Mitreva, Makedonka, Alekseyenko, Alexander V., Weinstock, George M., Sodergren, Erica, Blaser, Martin J.
Published in Nature communications (30.06.2015)
Published in Nature communications (30.06.2015)
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Journal Article
Chemotherapy-induced oral mucositis is associated with detrimental bacterial dysbiosis
Hong, Bo-Young, Sobue, Takanori, Choquette, Linda, Dupuy, Amanda K., Thompson, Angela, Burleson, Joseph A., Salner, Andrew L., Schauer, Peter K., Joshi, Pujan, Fox, Evan, Shin, Dong-Guk, Weinstock, George M., Strausbaugh, Linda D., Dongari-Bagtzoglou, Anna, Peterson, Douglas E., Diaz, Patricia I.
Published in Microbiome (25.04.2019)
Published in Microbiome (25.04.2019)
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Journal Article
Diet during Pregnancy and Infancy and the Infant Intestinal Microbiome
Savage, Jessica H., Lee-Sarwar, Kathleen A., Sordillo, Joanne E., Lange, Nancy E., Zhou, Yanjiao, O'Connor, George T., Sandel, Megan, Bacharier, Leonard B., Zeiger, Robert, Sodergren, Erica, Weinstock, George M., Gold, Diane R., Weiss, Scott T., Litonjua, Augusto A.
Published in The Journal of pediatrics (01.12.2018)
Published in The Journal of pediatrics (01.12.2018)
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Journal Article
Metagenomic analysis of double-stranded DNA viruses in healthy adults
Wylie, Kristine M, Mihindukulasuriya, Kathie A, Zhou, Yanjiao, Sodergren, Erica, Storch, Gregory A, Weinstock, George M
Published in BMC biology (10.09.2014)
Published in BMC biology (10.09.2014)
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Journal Article
Pan-Genome and Comparative Genome Analyses of Propionibacterium acnes Reveal Its Genomic Diversity in the Healthy and Diseased Human Skin Microbiome
Tomida, Shuta, Nguyen, Lin, Chiu, Bor-Han, Liu, Jared, Sodergren, Erica, Weinstock, George M., Li, Huiying
Published in mBio (01.07.2013)
Published in mBio (01.07.2013)
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Journal Article