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Shared Signatures of Parasitism and Phylogenomics Unite Cryptomycota and Microsporidia
James, Timothy Y., Pelin, Adrian, Bonen, Linda, Ahrendt, Steven, Sain, Divya, Corradi, Nicolas, Stajich, Jason E.
Published in Current biology (19.08.2013)
Published in Current biology (19.08.2013)
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Journal Article
The pan-genome of Aspergillus fumigatus provides a high-resolution view of its population structure revealing high levels of lineage-specific diversity driven by recombination
Lofgren, Lotus A., Ross, Brandon S., Cramer, Robert A., Stajich, Jason E.
Published in PLoS biology (17.11.2022)
Published in PLoS biology (17.11.2022)
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Journal Article
Tracking the origin of two genetic components associated with transposable element bursts in domesticated rice
Chen, Jinfeng, Lu, Lu, Benjamin, Jazmine, Diaz, Stephanie, Hancock, C. Nathan, Stajich, Jason E., Wessler, Susan R.
Published in Nature communications (07.02.2019)
Published in Nature communications (07.02.2019)
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Journal Article
Threats Posed by the Fungal Kingdom to Humans, Wildlife, and Agriculture
Fisher, Matthew C., Gurr, Sarah J., Cuomo, Christina A., Blehert, David S., Jin, Hailing, Stukenbrock, Eva H., Stajich, Jason E., Kahmann, Regine, Boone, Charles, Denning, David W., Gow, Neil A. R., Klein, Bruce S., Kronstad, James W., Sheppard, Donald C., Taylor, John W., Wright, Gerard D., Heitman, Joseph, Casadevall, Arturo, Cowen, Leah E.
Published in mBio (05.05.2020)
Published in mBio (05.05.2020)
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Journal Article
Kingdom-wide CRISPR guide design with ALLEGRO
Mohseni, Amirsadra, Nia, Reyhane Ghorbani, Tafrishi, Aida, López, Mario León, Liu, Xin-Zhan, Stajich, Jason E, Lonardi, Stefano, Wheeldon, Ian
Published in Nucleic acids research (11.08.2025)
Published in Nucleic acids research (11.08.2025)
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Journal Article
Contributions of North American endophytes to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota)
U’Ren, Jana M., Miadlikowska, Jolanta, Zimmerman, Naupaka B., Lutzoni, François, Stajich, Jason E., Arnold, A. Elizabeth
Published in Molecular phylogenetics and evolution (01.05.2016)
Published in Molecular phylogenetics and evolution (01.05.2016)
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Journal Article
Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles
Castanera, Raúl, López-Varas, Leticia, Borgognone, Alessandra, LaButti, Kurt, Lapidus, Alla, Schmutz, Jeremy, Grimwood, Jane, Pérez, Gúmer, Pisabarro, Antonio G., Grigoriev, Igor V., Stajich, Jason E., Ramírez, Lucía
Published in PLoS genetics (13.06.2016)
Published in PLoS genetics (13.06.2016)
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Journal Article
Phylogenomics of Endogonaceae and evolution of mycorrhizas within Mucoromycota
Chang, Ying, Desirò, Alessandro, Na, Hyunsoo, Sandor, Laura, Lipzen, Anna, Clum, Alicia, Barry, Kerrie, Grigoriev, Igor V., Martin, Francis M., Stajich, Jason E., Smith, Matthew E., Bonito, Gregory, Spatafora, Joseph W.
Published in The New phytologist (01.04.2019)
Published in The New phytologist (01.04.2019)
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Journal Article
Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi
Lofgren, Lotus A., Nguyen, Nhu H., Vilgalys, Rytas, Ruytinx, Joske, Liao, Hui-Ling, Branco, Sara, Kuo, Alan, LaButti, Kurt, Lipzen, Anna, Andreopoulos, William, Pangilinan, Jasmyn, Riley, Robert, Hundley, Hope, Na, Hyunsoo, Barry, Kerrie, Grigoriev, Igor V., Stajich, Jason E., Kennedy, Peter G.
Published in The New phytologist (01.04.2021)
Published in The New phytologist (01.04.2021)
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Journal Article
Innovation and constraint leading to complex multicellularity in the Ascomycota
Nguyen, Tu Anh, Cissé, Ousmane H., Yun Wong, Jie, Zheng, Peng, Hewitt, David, Nowrousian, Minou, Stajich, Jason E., Jedd, Gregory
Published in Nature communications (08.02.2017)
Published in Nature communications (08.02.2017)
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Journal Article
Genomic Transition to Pathogenicity in Chytrid Fungi
Joneson, Suzanne, Stajich, Jason E., Shiu, Shin-Han, Rosenblum, Erica Bree
Published in PLoS pathogens (01.11.2011)
Published in PLoS pathogens (01.11.2011)
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Journal Article
Complex history of the amphibian-killing chytrid fungus revealed with genome resequencing data
Rosenblum, Erica Bree, James, Timothy Y., Zamudio, Kelly R., Poorten, Thomas J., Ilut, Dan, Rodriguez, David, Eastman, Jonathan M., Richards-Hrdlicka, Katy, Joneson, Suzanne, Jenkinson, Thomas S., Longcore, Joyce E., Olea, Gabriela Parra, Toledo, Luís Felipe, Arellano, Maria Luz, Medina, Edgar M., Restrepo, Silvia, Flechas, Sandra Victoria, Berger, Lee, Briggs, Cheryl J., Stajich, Jason E.
Published in Proceedings of the National Academy of Sciences - PNAS (04.06.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (04.06.2013)
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Journal Article
Diploid-dominant life cycles characterize the early evolution of Fungi
Amses, Kevin R., Simmons, D. Rabern, Longcore, Joyce E., Mondo, Stephen J., Seto, Kensuke, Jerônimo, Gustavo H., Bonds, Anne E., Quandt, C. Alisha, Davis, William J., Chang, Ying, Federici, Brian A., Kuo, Alan, LaButti, Kurt, Pangilinan, Jasmyn, Andreopoulos, William, Tritt, Andrew, Riley, Robert, Hundley, Hope, Johnson, Jenifer, Lipzen, Anna, Barry, Kerrie, Lang, B. Franz, Cuomo, Christina A., Buchler, Nicolas E., Grigoriev, Igor V., Spatafora, Joseph W., Stajich, Jason E., James, Timothy Y.
Published in Proceedings of the National Academy of Sciences - PNAS (06.09.2022)
Published in Proceedings of the National Academy of Sciences - PNAS (06.09.2022)
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Journal Article
Antarctic Cryptoendolithic Fungal Communities Are Highly Adapted and Dominated by Lecanoromycetes and Dothideomycetes
Coleine, Claudia, Stajich, Jason E., Zucconi, Laura, Onofri, Silvano, Pombubpa, Nuttapon, Egidi, Eleonora, Franks, Ashley, Buzzini, Pietro, Selbmann, Laura
Published in Frontiers in microbiology (29.06.2018)
Published in Frontiers in microbiology (29.06.2018)
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Journal Article