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Virome Analysis of Amblyomma americanum, Dermacentor variabilis, and Ixodes scapularis Ticks Reveals Novel Highly Divergent Vertebrate and Invertebrate Viruses
Tokarz, Rafal, Williams, Simon Hedley, Sameroff, Stephen, Sanchez Leon, Maria, Jain, Komal, Lipkin, W. Ian
Published in Journal of virology (01.10.2014)
Published in Journal of virology (01.10.2014)
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Journal Article
Middle East Respiratory Syndrome Coronavirus Infection in Dromedary Camels in Saudi Arabia
Alagaili, Abdulaziz N., Briese, Thomas, Mishra, Nischay, Kapoor, Vishal, Sameroff, Stephen C., de Wit, Emmie, Munster, Vincent J., Hensley, Lisa E., Zalmout, Iyad S., Kapoor, Amit, Epstein, Jonathan H., Karesh, William B., Daszak, Peter, Mohammed, Osama B., Lipkin, W. Ian
Published in mBio (25.02.2014)
Published in mBio (25.02.2014)
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Journal Article
Viral Diversity of Tick Species Parasitizing Cattle and Dogs in Trinidad and Tobago
Sameroff, Stephen, Tokarz, Rafal, Charles, Roxanne Albertha, Jain, Komal, Oleynik, Alexandra, Che, Xiaoyu, Georges, Karla, Carrington, Christine V., Lipkin, W. Ian, Oura, Chris
Published in Scientific reports (18.07.2019)
Published in Scientific reports (18.07.2019)
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Journal Article
A multiplex serologic platform for diagnosis of tick-borne diseases
Tokarz, Rafal, Mishra, Nischay, Tagliafierro, Teresa, Sameroff, Stephen, Caciula, Adrian, Chauhan, Lokendrasingh, Patel, Jigar, Sullivan, Eric, Gucwa, Azad, Fallon, Brian, Golightly, Marc, Molins, Claudia, Schriefer, Martin, Marques, Adriana, Briese, Thomas, Lipkin, W. Ian
Published in Scientific reports (16.02.2018)
Published in Scientific reports (16.02.2018)
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Journal Article
Multidimensional analysis of the host response reveals prognostic and pathogen-driven immune subtypes among adults with sepsis in Uganda
Cummings, Matthew J., Bakamutumaho, Barnabas, Price, Adam, Owor, Nicholas, Kayiwa, John, Namulondo, Joyce, Byaruhanga, Timothy, Muwanga, Moses, Nsereko, Christopher, Sameroff, Stephen, Tokarz, Rafal, Wong, Wai, Shah, Shivang S., Larsen, Michelle H., Lipkin, W. Ian, Lutwama, Julius J., O’Donnell, Max R.
Published in Critical care (London, England) (08.02.2022)
Published in Critical care (London, England) (08.02.2022)
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Journal Article
Virome capture sequencing does not identify active viral infection in unicentric and idiopathic multicentric Castleman disease
Nabel, Christopher S., Sameroff, Stephen, Shilling, Dustin, Alapat, Daisy, Ruth, Jason R., Kawano, Mitsuhiro, Sato, Yasuharu, Stone, Katie, Spetalen, Signe, Valdivieso, Federico, Feldman, Michael D., Chadburn, Amy, Fosså, Alexander, van Rhee, Frits, Lipkin, W. Ian, Fajgenbaum, David C.
Published in PloS one (26.06.2019)
Published in PloS one (26.06.2019)
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Journal Article
SARS-CoV-2 Sequence Analysis during COVID-19 Case Surge, Liberia, 2021
Shobayo, Bode, Mishra, Mitali, Sameroff, Stephen, Petrosov, Alexandra, Ng, James, Gokden, Alper, MaCauley, Jane, Jain, Komal, Renken, Courtney, Duworko, James Tanu, Badio, Moses, Jallah, Wilhemina, Hensley, Lisa, Briese, Thomas, Lipkin, W. Ian, Mishra, Nischay
Published in Emerging infectious diseases (01.12.2021)
Published in Emerging infectious diseases (01.12.2021)
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Journal Article
Development of a capture sequencing assay for enhanced detection and genotyping of tick-borne pathogens
Jain, Komal, Tagliafierro, Teresa, Marques, Adriana, Sanchez-Vicente, Santiago, Gokden, Alper, Fallon, Brian, Mishra, Nischay, Briese, Thomas, Kapoor, Vishal, Sameroff, Stephen, Guo, Cheng, Marcos, Luis A., Hu, Linden, Lipkin, W. Ian, Tokarz, Rafal
Published in Scientific reports (11.06.2021)
Published in Scientific reports (11.06.2021)
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Journal Article
Virome of Ixodes ricinus, Dermacentor reticulatus, and Haemaphysalis concinna Ticks from Croatia
Sameroff, Stephen, Tokarz, Rafal, Vucelja, Marko, Jain, Komal, Oleynik, Alexandra, Boljfetić, Marko, Bjedov, Linda, Yates, Rachel A., Margaletić, Josip, Oura, Christopher A. L., Lipkin, Walter Ian, Cvetko Krajinović, Lidija, Markotić, Alemka
Published in Viruses (29.04.2022)
Published in Viruses (29.04.2022)
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Journal Article
Dynamics of SARS-CoV-2 variants characterized during different COVID-19 waves in Mali
Koné, Amadou, Diallo, Dramane, Kané, Fousseyni, Diarra, Bassirou, Coulibaly, Tenin Aminatou, Sameroff, Stephen C., Diarra, Hawa B., Diakité, Mahamane T., Camara, Fatoumata, Maiga, Oumou, Keita, Daouda, Dolo, Oumar, Somboro, Amadou, Coulibaly, Youssouf, Bane, Sidy, Togo, Antieme C.G., Somboro, Anou M., Togo, Josué, Coulibaly, Mariam, Coulibaly, Gagni, Kone, Mahamadou, Degoga, Boureima, Dramé, Hawa Baye, Traoré, Fah Gaoussou, Diallo, Fatimata, Sanogo, Fanta, Kone, Kadidia, Diallo, Ibrahima B., Sanogo, Moumine, Diakité, Mahamadou, Mishra, Nischay, Neal, Aaron, Saliba-Shaw, Katy, Sow, Ydrissa, Hensley, Lisa, Lane, H. Clifford, Briese, Thomas, Lipkin, W. Ian, Doumbia, Seydou
Published in IJID regions (01.03.2023)
Published in IJID regions (01.03.2023)
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Journal Article
A Multicenter Blinded Analysis Indicates No Association between Chronic Fatigue Syndrome/Myalgic Encephalomyelitis and either Xenotropic Murine Leukemia Virus-Related Virus or Polytropic Murine Leukemia Virus
Alter, Harvey J., Mikovits, Judy A., Switzer, William M., Ruscetti, Francis W., Lo, Shyh-Ching, Klimas, Nancy, Komaroff, Anthony L., Montoya, Jose G., Bateman, Lucinda, Levine, Susan, Peterson, Daniel, Levin, Bruce, Hanson, Maureen R., Genfi, Afia, Bhat, Meera, Zheng, HaoQiang, Wang, Richard, Li, Bingjie, Hung, Guo-Chiuan, Lee, Li Ling, Sameroff, Stephen, Heneine, Walid, Coffin, John, Hornig, Mady, Lipkin, W. Ian
Published in mBio (01.11.2012)
Published in mBio (01.11.2012)
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Journal Article
Serotype Analysis of Streptococcus pneumoniae in Lung and Nasopharyngeal Aspirates from Children in the Gambia by MassTag PCR
Tokarz, Rafal, Briese, Thomas, Morris, Gerard, Ideh, Readon, Chimah, Osaretin, Ebruke, Bernard, Desai, Aaloki, Haq, Saddef, Sameroff, Stephen, Howie, Stephen R. C., Lipkin, W. Ian
Published in Journal of Clinical Microbiology (01.03.2013)
Published in Journal of Clinical Microbiology (01.03.2013)
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Journal Article
Correction to Middle East Respiratory Syndrome Coronavirus Infection in Dromedary Camels in Saudi Arabia
Alagaili, Abdulaziz N., Briese, Thomas, Mishra, Nischay, Kapoor, Vishal, Sameroff, Stephen C., Burbelo, Peter D., de Wit, Emmie, Munster, Vincent J., Hensley, Lisa E., Zalmout, Iyad S., Kapoor, Amit, Epstein, Jonathan H., Karesh, William B., Daszak, Peter, Mohammed, Osama B., Lipkin, W. Ian
Published in mBio (01.05.2014)
Published in mBio (01.05.2014)
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Journal Article
HIV infection drives pro-inflammatory immunothrombotic pathway activation and organ dysfunction among adults with sepsis in Uganda
Cummings, Matthew J., Bakamutumaho, Barnabas, Price, Adam, Owor, Nicholas, Kayiwa, John, Namulondo, Joyce, Byaruhanga, Timothy, Jain, Komal, Postler, Thomas S., Muwanga, Moses, Nsereko, Christopher, Nayiga, Irene, Kyebambe, Stephen, Che, Xiaoyu, Sameroff, Stephen, Tokarz, Rafal, Shah, Shivang S., Larsen, Michelle H., Lipkin, W. Ian, Lutwama, Julius J., O’Donnell, Max R.
Published in AIDS (London) (01.02.2023)
Published in AIDS (London) (01.02.2023)
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Journal Article
A metagenomic examination of the pathobiome of the invasive tick species, Haemaphysalis longicornis, collected from a New York City borough, USA
Tufts, Danielle M., Sameroff, Stephen, Tagliafierro, Teresa, Jain, Komal, Oleynik, Alexandra, VanAcker, Meredith C., Diuk-Wasser, Maria A., Lipkin, W. Ian, Tokarz, Rafal
Published in Ticks and tick-borne diseases (01.11.2020)
Published in Ticks and tick-borne diseases (01.11.2020)
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Journal Article
HIV infection drives pro-inflammatory immunothrombotic pathway activation and organ dysfunction among adults with sepsis in Uganda
Cummings, Matthew J., Bakamutumaho, Barnabas, Price, Adam, Owor, Nicholas, Kayiwa, John, Namulondo, Joyce, Byaruhanga, Timothy, Jain, Komal, Postler, Thomas S., Muwanga, Moses, Nsereko, Christopher, Nayiga, Irene, Kyebambe, Stephen, Che, Xiaoyu, Sameroff, Stephen, Tokarz, Rafal, Shah, Shivang S., Larsen, Michelle H., Lipkin, W. Ian, Lutwama, Julius J., O'Donnell, Max R.
Published in AIDS (London) (01.02.2023)
Published in AIDS (London) (01.02.2023)
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Journal Article
HIV infection drives pro-inflammatory immunothrombotic pathway activation and organ dysfunction among adults with sepsis in Uganda: a prospective cohort study
Cummings, Matthew J., Bakamutumaho, Barnabas, Price, Adam, Owor, Nicholas, Kayiwa, John, Namulondo, Joyce, Byaruhanga, Timothy, Jain, Komal, Postler, Thomas S., Muwanga, Moses, Nsereko, Christopher, Nayiga, Irene, Kyebambe, Stephen, Che, Xiaoyu, Sameroff, Stephen, Tokarz, Rafal, Shah, Shivang S., Larsen, Michelle H., Lipkin, W. Ian, Lutwama, Julius J., O’Donnell, Max R.
Published in AIDS (London) (24.10.2022)
Published in AIDS (London) (24.10.2022)
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Journal Article
Development of a Novel Clinicomolecular Risk Index to Enhance Mortality Prediction and Immunological Stratification of Adults Hospitalized with Sepsis in Sub-Saharan Africa: A Pilot Study from Uganda
Cummings, Matthew J., Bakamutumaho, Barnabas, Jain, Komal, Price, Adam, Owor, Nicholas, Kayiwa, John, Namulondo, Joyce, Byaruhanga, Timothy, Muwanga, Moses, Nsereko, Christopher, Sameroff, Stephen, Ian Lipkin, W., Lutwama, Julius J., O’Donnell, Max R.
Published in The American journal of tropical medicine and hygiene (01.03.2023)
Published in The American journal of tropical medicine and hygiene (01.03.2023)
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Journal Article
Viral capture sequencing detects unexpected viruses in the cerebrospinal fluid of adults with meningitis
McGill, Fiona, Tokarz, Rafal, Thomson, Emma C, Filipe, Ana, Sameroff, Stephen, Jain, Komal, Bhuva, Nishit, Ashraf, Shirin, Lipkin, W. Ian, Corless, Caroline, Pattabiraman, Chitra, Gibney, Barry, Griffiths, Michael J, Geretti, Anna Maria, Michael, Benedict D, Beeching, Nicholas J, McKee, David, Hart, Ian J, Mutton, Ken, Jung, Agam, Miller, Alastair, Solomon, Tom
Published in The Journal of infection (01.04.2022)
Published in The Journal of infection (01.04.2022)
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Journal Article