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Structures, physicochemical properties, and applications of T–Hgᴵᴵ–T, C–Agᴵ–C, and other metallo-base-pairs
Tanaka, Yoshiyuki, Kondo, J, Sychrovský, Vladimír, Šebera, Jakub, Dairaku, Takenori, Saneyoshi, Hisao, Urata, Hidehito, Torigoe, Hidetaka, Ono, Akira
Published in Chemical communications (Cambridge, England) (26.11.2015)
Published in Chemical communications (Cambridge, England) (26.11.2015)
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Journal Article
Femtosecond Fluorescence and Intersystem Crossing in Rhenium(I) Carbonyl−Bipyridine Complexes
Cannizzo, Andrea, Blanco-Rodríguez, Ana Maria, El Nahhas, Amal, Šebera, Jakub, Záliš, Stanislav, Vlček, Jr, Antonín, Chergui, Majed
Published in Journal of the American Chemical Society (16.07.2008)
Published in Journal of the American Chemical Society (16.07.2008)
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Journal Article
Tuning Charge Transport Properties of Asymmetric Molecular Junctions
Šebera, Jakub, Kolivoška, Viliam, Valášek, Michal, Gasior, Jindřich, Sokolová, Romana, Mészáros, Gábor, Hong, Wenjing, Mayor, Marcel, Hromadová, Magdaléna
Published in Journal of physical chemistry. C (15.06.2017)
Published in Journal of physical chemistry. C (15.06.2017)
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Journal Article
Quantitative Analysis of Nanorough Hydrogenated Si(111) Surfaces through Vibrational Spectral Assignment by Periodic DFT Calculations
Holovský, Jakub, Šebera, Jakub, Sychrovský, Vladimír, Zemen, Jan, De Wolf, Stefaan, Ballif, Christophe
Published in Journal of physical chemistry. C (19.05.2022)
Published in Journal of physical chemistry. C (19.05.2022)
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Journal Article
FTIR Measurement of the Hydrogenated Si(100) Surface: The Structure-Vibrational Interpretation by Means of Periodic DFT Calculation
Šebera, Jakub, Zemen, Jan, Jirásek, Vít, Holovský, Jakub, Sychrovský, Vladimír
Published in Journal of physical chemistry. C (06.05.2021)
Published in Journal of physical chemistry. C (06.05.2021)
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Journal Article
The structural model of Zika virus RNA-dependent RNA polymerase in complex with RNA for rational design of novel nucleotide inhibitors
Šebera, Jakub, Dubankova, Anna, Sychrovský, Vladimír, Ruzek, Daniel, Boura, Evzen, Nencka, Radim
Published in Scientific reports (24.07.2018)
Published in Scientific reports (24.07.2018)
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Journal Article
Pencil graphite electrodes for in-situ spectroelectrochemical sensing of reaction intermediates and products in organic solvents
Vaněčková, Eva, Hrdlička, Vojtěch, Šebera, Jakub, Hromadová, Magdaléna, Kocábová, Jana, Sebechlebská, Táňa, Kolivoška, Viliam
Published in Analytica chimica acta (01.04.2024)
Published in Analytica chimica acta (01.04.2024)
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Journal Article
Self-Assembled Monolayers of Molecular Conductors with Terpyridine-Metal Redox Switching Elements: A Combined AFM, STM and Electrochemical Study
Kocábová, Jana, Vavrek, František, Nováková Lachmanová, Štěpánka, Šebera, Jakub, Valášek, Michal, Hromadová, Magdaléna
Published in Molecules (Basel, Switzerland) (29.11.2022)
Published in Molecules (Basel, Switzerland) (29.11.2022)
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Journal Article
The structure of metallo-DNA with consecutive thymine–HgII–thymine base pairs explains positive entropy for the metallo base pair formation
Yamaguchi, Hiroshi, Šebera, Jakub, Kondo, Jiro, Oda, Shuji, Komuro, Tomoyuki, Kawamura, Takuya, Dairaku, Takenori, Kondo, Yoshinori, Okamoto, Itaru, Ono, Akira, Burda, Jaroslav V., Kojima, Chojiro, Sychrovský, Vladimír, Tanaka, Yoshiyuki
Published in Nucleic acids research (01.04.2014)
Published in Nucleic acids research (01.04.2014)
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Journal Article
Structure Determination of an AgI-Mediated Cytosine-Cytosine Base Pair within DNA Duplex in Solution with 1H/15N/109Ag NMR Spectroscopy
Dairaku, Takenori, Furuita, Kyoko, Sato, Hajime, Šebera, Jakub, Nakashima, Katsuyuki, Kondo, Jiro, Yamanaka, Daichi, Kondo, Yoshinori, Okamoto, Itaru, Ono, Akira, Sychrovský, Vladimír, Kojima, Chojiro, Tanaka, Yoshiyuki
Published in Chemistry : a European journal (05.09.2016)
Published in Chemistry : a European journal (05.09.2016)
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Journal Article
QM and QM/MM umbrella sampling MD study of the formation of Hg(II)–thymine bond: Model for evaluation of the reaction energy profiles in solutions with constant pH
Šebesta, Filip, Šebera, Jakub, Sychrovský, Vladimír, Tanaka, Yoshiyuki, Burda, Jaroslav V.
Published in Journal of computational chemistry (15.06.2020)
Published in Journal of computational chemistry (15.06.2020)
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Journal Article
Formation of a Thymine-HgII-Thymine Metal-Mediated DNA Base Pair: Proposal and Theoretical Calculation of the Reaction Pathway
Šebera, Jakub, Burda, Jaroslav, Straka, Michal, Ono, Akira, Kojima, Chojiro, Tanaka, Yoshiyuki, Sychrovský, Vladimír
Published in Chemistry : a European journal (22.07.2013)
Published in Chemistry : a European journal (22.07.2013)
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Journal Article
Benchmark Theoretical and Experimental Study on 15N NMR Shifts of Oxidatively Damaged Guanine
Dračínský, Martin, Šála, Michal, Klepetářová, Blanka, Šebera, Jakub, Fukal, Jiří, Holečková, Veronika, Tanaka, Yoshiyuki, Nencka, Radim, Sychrovský, Vladimír
Published in The journal of physical chemistry. B (11.02.2016)
Published in The journal of physical chemistry. B (11.02.2016)
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Journal Article
The mechanism of the glycosylase reaction with hOGG1 base-excision repair enzyme: concerted effect of Lys249 and Asp268 during excision of 8-oxoguanine
Šebera, Jakub, Hattori, Yoshikazu, Sato, Daichi, Řeha, David, Nencka, Radim, Kohno, Takashi, Kojima, Chojiro, Tanaka, Yoshiyuki, Sychrovský, Vladimír
Published in Nucleic acids research (19.05.2017)
Published in Nucleic acids research (19.05.2017)
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Journal Article