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Enhanced specificity of clinical high-sensitivity tumor mutation profiling in cell-free DNA via paired normal sequencing using MSK-ACCESS
Rose Brannon, A., Jayakumaran, Gowtham, Diosdado, Monica, Patel, Juber, Razumova, Anna, Hu, Yu, Meng, Fanli, Haque, Mohammad, Sadowska, Justyna, Murphy, Brian J., Baldi, Tessara, Johnson, Ian, Ptashkin, Ryan, Hasan, Maysun, Srinivasan, Preethi, Rema, Anoop Balakrishnan, Rijo, Ivelise, Agarunov, Aaron, Won, Helen, Perera, Dilmi, Brown, David N., Samoila, Aliaksandra, Jing, Xiaohong, Gedvilaite, Erika, Yang, Julie L., Stephens, Dennis P., Dix, Jenna-Marie, DeGroat, Nicole, Nafa, Khedoudja, Syed, Aijazuddin, Li, Alan, Lebow, Emily S., Bowman, Anita S., Ferguson, Donna C., Liu, Ying, Mata, Douglas A., Sharma, Rohit, Yang, Soo-Ryum, Bale, Tejus, Benhamida, Jamal K., Chang, Jason C., Dogan, Snjezana, Hameed, Meera R., Hechtman, Jaclyn F., Moung, Christine, Ross, Dara S., Vakiani, Efsevia, Vanderbilt, Chad M., Yao, JinJuan, Razavi, Pedram, Smyth, Lillian M., Chandarlapaty, Sarat, Iyer, Gopa, Abida, Wassim, Harding, James J., Krantz, Benjamin, O’Reilly, Eileen, Yu, Helena A., Li, Bob T., Rudin, Charles M., Diaz, Luis, Solit, David B., Arcila, Maria E., Ladanyi, Marc, Loomis, Brian, Tsui, Dana, Berger, Michael F., Zehir, Ahmet, Benayed, Ryma
Published in Nature communications (18.06.2021)
Published in Nature communications (18.06.2021)
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Journal Article
Cell-free DNA from nail clippings as source of normal control for genomic studies in hematologic malignancies
Krystel-Whittemore, Melissa, Petrova-Drus, Kseniya, Ptashkin, Ryan N., Ewalt, Mark D., Yao, JinJuan, Liu, Ying, Zhu, Menglei, Benhamida, Jamal, Durham, Benjamin, Kumar, Jyoti, Nafa, Khedoudja, Kiecka, Iwona, Bowman, Anita S., Gedvilaite, Erika, Casanova, Jacklyn, Lin, Yun-Te, Mohanty, Abhinita S., Rana, Satshil, Rema, Anoop Balakrishnan, Rijo, Ivelise, Chaves, Nelio, Salazar, Paulo, Yun, Anita, Lachhander, Sean, Wang, Wei, Haque, Mohammad S., Xiao, Wenbin, Roshal, Mikhail, Giralt, Sergio, Salles, Gilles, Rampal, Raajit, Stein, Eytan M., Perales, Miguel-Angel, Horwitz, Steven, Jakubowski, Ann, Ponce, Doris, Markova, Alina, Birsoy, Ozge, Mandelker, Diana, Mantha, Simon, Dogan, Ahmet, Benayed, Ryma, Ladanyi, Marc, Berger, Michael F., Brannon, A. Rose, Zehir, Ahmet, Vanderbilt, Chad, Arcila, Maria E.
Published in Haematologica (Roma) (01.10.2024)
Published in Haematologica (Roma) (01.10.2024)
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Journal Article
O12: Clonal hematopoiesis-related variants confounding hereditary cancer testing: Results from matched tumor-normal sequencing of 26,329 cancer patients
Birsoy, Ozge, Rema, Anoop Balakrishnan, Rana, Satshil, Brannon, Rose, Syed, Aijazuddin, Mandelker, Diana
Published in Genetics in Medicine Open (2024)
Published in Genetics in Medicine Open (2024)
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Journal Article
Mutational landscape of metastatic cancer revealed from prospective clinical sequencing of 10,000 patients
Zehir, Ahmet, Benayed, Ryma, Shah, Ronak H, Syed, Aijazuddin, Middha, Sumit, Kim, Hyunjae R, Srinivasan, Preethi, Gao, Jianjiong, Chakravarty, Debyani, Devlin, Sean M, Hellmann, Matthew D, Barron, David A, Schram, Alison M, Hameed, Meera, Dogan, Snjezana, Ross, Dara S, Hechtman, Jaclyn F, DeLair, Deborah F, Yao, JinJuan, Mandelker, Diana L, Cheng, Donavan T, Chandramohan, Raghu, Mohanty, Abhinita S, Ptashkin, Ryan N, Jayakumaran, Gowtham, Prasad, Meera, Syed, Mustafa H, Rema, Anoop Balakrishnan, Liu, Zhen Y, Nafa, Khedoudja, Borsu, Laetitia, Sadowska, Justyna, Casanova, Jacklyn, Bacares, Ruben, Kiecka, Iwona J, Razumova, Anna, Son, Julie B, Stewart, Lisa, Baldi, Tessara, Mullaney, Kerry A, Al-Ahmadie, Hikmat, Vakiani, Efsevia, Abeshouse, Adam A, Penson, Alexander V, Jonsson, Philip, Camacho, Niedzica, Chang, Matthew T, Won, Helen H, Gross, Benjamin E, Kundra, Ritika, Heins, Zachary J, Chen, Hsiao-Wei, Phillips, Sarah, Zhang, Hongxin, Wang, Jiaojiao, Ochoa, Angelica, Wills, Jonathan, Eubank, Michael, Thomas, Stacy B, Gardos, Stuart M, Reales, Dalicia N, Galle, Jesse, Durany, Robert, Cambria, Roy, Abida, Wassim, Cercek, Andrea, Feldman, Darren R, Gounder, Mrinal M, Hakimi, A Ari, Harding, James J, Iyer, Gopa, Janjigian, Yelena Y, Jordan, Emmet J, Kelly, Ciara M, Lowery, Maeve A, Morris, Luc G T, Omuro, Antonio M, Raj, Nitya, Razavi, Pedram, Shoushtari, Alexander N, Shukla, Neerav, Soumerai, Tara E, Varghese, Anna M, Yaeger, Rona, Coleman, Jonathan, Bochner, Bernard, Riely, Gregory J, Saltz, Leonard B, Scher, Howard I, Sabbatini, Paul J, Robson, Mark E, Klimstra, David S, Taylor, Barry S, Baselga, Jose, Schultz, Nikolaus, Hyman, David M, Arcila, Maria E, Solit, David B, Ladanyi, Marc, Berger, Michael F
Published in Nature medicine (01.06.2017)
Published in Nature medicine (01.06.2017)
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Journal Article
Abstract 1066: OncoKBTM, MSK’s precision oncology knowledge base: 2024 updates
Nissan, Moriah H., Suehnholz, Sarah P., Zhang, Hongxin, Kundra, Ritika, Lu, Calvin, Dhaneshwar, Amanda, Fernandez, Nicole, Cavender, Kelly, Preiser, Benjamin, Konecny, John, Petrova, Kseniya, Ewalt, Mark, Arcila, Maria E., Ladanyi, Marc, Berger, Michael F., Balakrishnan-Rema, Anoop, Syed, Aijazuddin, Brannon, A. Rose, Dogan, Ahmet, Mandelker, Diana, Stadler, Zsofia, Drilon, Alexander, Solit, David B., Levine, Ross, Schultz, Nikolaus, Chakravarty, Debyani
Published in Cancer research (Chicago, Ill.) (21.04.2025)
Published in Cancer research (Chicago, Ill.) (21.04.2025)
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Journal Article
Deep-Learning Model for Tumor-Type Prediction Using Targeted Clinical Genomic Sequencing Data
Darmofal, Madison, Suman, Shalabh, Atwal, Gurnit, Toomey, Michael, Chen, Jie-Fu, Chang, Jason C., Vakiani, Efsevia, Varghese, Anna M., Balakrishnan Rema, Anoop, Syed, Aijazuddin, Schultz, Nikolaus, Berger, Michael F., Morris, Quaid
Published in Cancer discovery (03.06.2024)
Published in Cancer discovery (03.06.2024)
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Journal Article
Enhanced clinical assessment of hematologic malignancies through routine paired tumor and normal sequencing
Ptashkin, Ryan N., Ewalt, Mark D., Jayakumaran, Gowtham, Kiecka, Iwona, Bowman, Anita S., Yao, JinJuan, Casanova, Jacklyn, Lin, Yun-Te David, Petrova-Drus, Kseniya, Mohanty, Abhinita S., Bacares, Ruben, Benhamida, Jamal, Rana, Satshil, Razumova, Anna, Vanderbilt, Chad, Balakrishnan Rema, Anoop, Rijo, Ivelise, Son-Garcia, Julie, de Bruijn, Ino, Zhu, Menglei, Lachhander, Sean, Wang, Wei, Haque, Mohammad S., Seshan, Venkatraman E., Wang, Jiajing, Liu, Ying, Nafa, Khedoudja, Borsu, Laetitia, Zhang, Yanming, Aypar, Umut, Suehnholz, Sarah P., Chakravarty, Debyani, Park, Jae H., Abdel-Wahab, Omar, Mato, Anthony R., Xiao, Wenbin, Roshal, Mikhail, Yabe, Mariko, Batlevi, Connie Lee, Giralt, Sergio, Salles, Gilles, Rampal, Raajit, Tallman, Martin, Stein, Eytan M., Younes, Anas, Levine, Ross L., Perales, Miguel-Angel, van den Brink, Marcel R. M., Dogan, Ahmet, Ladanyi, Marc, Berger, Michael F., Brannon, A. Rose, Benayed, Ryma, Zehir, Ahmet, Arcila, Maria E.
Published in Nature communications (28.10.2023)
Published in Nature communications (28.10.2023)
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Journal Article
Erratum: Mutational landscape of metastatic cancer revealed from prospective clinical sequencing of 10,000 patients
Zehir, Ahmet, Benayed, Ryma, Shah, Ronak H, Syed, Aijazuddin, Middha, Sumit, Kim, Hyunjae R, Srinivasan, Preethi, Gao, Jianjiong, Chakravarty, Debyani, Devlin, Sean M, Hellmann, Matthew D, Barron, David A, Schram, Alison M, Hameed, Meera, Dogan, Snjezana, Ross, Dara S, Hechtman, Jaclyn F, DeLair, Deborah F, Yao, JinJuan, Mandelker, Diana L, Cheng, Donavan T, Chandramohan, Raghu, Mohanty, Abhinita S, Ptashkin, Ryan N, Jayakumaran, Gowtham, Prasad, Meera, Syed, Mustafa H, Rema, Anoop Balakrishnan, Liu, Zhen Y, Nafa, Khedoudja, Borsu, Laetitia, Sadowska, Justyna, Casanova, Jacklyn, Bacares, Ruben, Kiecka, Iwona J, Razumova, Anna, Son, Julie B, Stewart, Lisa, Baldi, Tessara, Mullaney, Kerry A, Al-Ahmadie, Hikmat, Vakiani, Efsevia, Abeshouse, Adam A, Penson, Alexander V, Jonsson, Philip, Camacho, Niedzica, Chang, Matthew T, Won, Helen H, Gross, Benjamin E, Kundra, Ritika, Heins, Zachary J, Chen, Hsiao-Wei, Phillips, Sarah, Zhang, Hongxin, Wang, Jiaojiao, Ochoa, Angelica, Wills, Jonathan, Eubank, Michael, Thomas, Stacy B, Gardos, Stuart M, Reales, Dalicia N, Galle, Jesse, Durany, Robert, Cambria, Roy, Abida, Wassim, Cercek, Andrea, Feldman, Darren R, Gounder, Mrinal M, Hakimi, A Ari, Harding, James J, Iyer, Gopa, Janjigian, Yelena Y, Jordan, Emmet J, Kelly, Ciara M, Lowery, Maeve A, Morris, Luc G T, Omuro, Antonio M, Raj, Nitya, Razavi, Pedram, Shoushtari, Alexander N, Shukla, Neerav, Soumerai, Tara E, Varghese, Anna M, Yaeger, Rona, Coleman, Jonathan, Bochner, Bernard, Riely, Gregory J, Saltz, Leonard B, Scher, Howard I, Sabbatini, Paul J, Robson, Mark E, Klimstra, David S, Taylor, Barry S, Baselga, Jose, Schultz, Nikolaus, Hyman, David M, Arcila, Maria E, Solit, David B, Ladanyi, Marc, Berger, Michael F
Published in Nature medicine (01.08.2017)
Published in Nature medicine (01.08.2017)
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Journal Article
Abstract 5440: Deep-learning model for tumor type classification enables enhanced clinical decision support in cancer diagnosis
Darmofal, Madison, Suman, Shalabh, Atwal, Gurnit, Chen, Jie-Fu, Varghese, Anna, Chang, Jason C., Rema, Anoop Balakrishnan, Syed, Aijazuddin, Morris, Quaid, Berger, Michael
Published in Cancer research (Chicago, Ill.) (04.04.2023)
Published in Cancer research (Chicago, Ill.) (04.04.2023)
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Journal Article
Abstract 3409: MSK-IMPACT Heme: Validation and clinical experience of a comprehensive molecular profiling platform for hematologic malignancies
Ptashkin, Ryan N., Benayed, Ryma, Ziegler, John, Rema, Anoop Balakrishnan, Sadowska, Justyna, Kiecka, Iwona, Ho, Caleb, Yao, JinJuan, Moung, Christine, Petrova-Drus, Kseniya, Nafa, Khedoudja, Batlevi, Connie, Tallman, Martin, Levine, Ross, Giralt, Sergio, Younes, Anas, Ladanyi, Marc, Berger, Mike, Zehir, Ahmet, Arcila, Maria E.
Published in Cancer research (Chicago, Ill.) (01.07.2019)
Published in Cancer research (Chicago, Ill.) (01.07.2019)
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Journal Article
Enhanced specificity of high sensitivity somatic variant profiling in cell-free DNA via paired normal sequencing: design, validation, and clinical experience of the MSK-ACCESS liquid biopsy assay
Angela Rose Brannon, Jayakumaran, Gowtham, Diosdado, Monica, Patel, Juber, Razumova, Anna, Hu, Yu, Meng, Fanli, Haque, Mohammad, Sadowska, Justyna, Murphy, Brian, Baldi, Tessera, Johnson, Ian, Ryan Ptashkin, Maysun Hasan, Srinivasan, Preethi, Anoop Balakrishnan Rema, Rijo, Ivelise, Agarunov, Aaron, Won, Helen, Perera, Dilmi, Brown, David N, Samolia, Aliaksandra, Jing, Xiaohong, Gedvilaite, Erika, Yang, Julie L, Stephens, Dennis P, Dix, Jenna-Marie, Degroat, Nicole, Nafa, Khedoudja, Aijazuddin Syed, Li, Alan, Lebow, Emily S, Bowman, Anita S, Ferguson, Donna C, Liu, Ying, Mata, Douglas A, Sharma, Rohit, Yang, Soo-Ryum, Bale, Tejus, Benhamida, Jamal K, Chang, Jason C, Dogan, Snjezana, Hameed, Meera R, Hechtman, Jaclyn F, Moung, Christine, Ross, Dara S, Vakiani, Efsevia, Vanderbilt, Chad M, Yao, Jinjuan, Razavi, Pedram, Smyth, Lillian M, Chandarlapaty, Sarat, Iyer, Gopa, Abida, Wassim, Harding, James J, Krantz, Benjamin, O'reilly, Eileen, Yu, Helena A, Li, Bob, Rudin, Charles, Diaz, Luis, Solit, David B, Arcila, Maria E, Ladanyi, Marc, Houck-Loomis, Brian, Tsui, Dana, Berger, Michael F, Zehir, Ahmet, Benayed, Ryma
Published in bioRxiv (29.06.2020)
Published in bioRxiv (29.06.2020)
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