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Defining the consequences of genetic variation on a proteome-wide scale
Chick, Joel M., Munger, Steven C., Simecek, Petr, Huttlin, Edward L., Choi, Kwangbom, Gatti, Daniel M., Raghupathy, Narayanan, Svenson, Karen L., Churchill, Gary A., Gygi, Steven P.
Published in Nature (London) (23.06.2016)
Published in Nature (London) (23.06.2016)
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Journal Article
A Bayesian mixture model for the analysis of allelic expression in single cells
Choi, Kwangbom, Raghupathy, Narayanan, Churchill, Gary A.
Published in Nature communications (15.11.2019)
Published in Nature communications (15.11.2019)
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Journal Article
Anapc5 and Anapc7 as genetic modifiers of KIF18A function in fertility and mitotic progression
Nesbit, Carleigh, Martin, Whitney, Czechanski, Anne, Byers, Candice, Raghupathy, Narayanan, Ferraj, Ardian, Stumpff, Jason, Reinholdt, Laura
Published in Scientific reports (02.07.2025)
Published in Scientific reports (02.07.2025)
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Journal Article
PRDM9 Drives Evolutionary Erosion of Hotspots in Mus musculus through Haplotype-Specific Initiation of Meiotic Recombination
Baker, Christopher L., Kajita, Shimpei, Walker, Michael, Saxl, Ruth L., Raghupathy, Narayanan, Choi, Kwangbom, Petkov, Petko M., Paigen, Kenneth
Published in PLoS genetics (01.01.2015)
Published in PLoS genetics (01.01.2015)
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Journal Article
Trappc9 deficiency causes parent-of-origin dependent microcephaly and obesity
Liang, Zhengzheng S., Cimino, Irene, Yalcin, Binnaz, Raghupathy, Narayanan, Vancollie, Valerie E., Ibarra-Soria, Ximena, Firth, Helen V., Rimmington, Debra, Farooqi, I. Sadaf, Lelliott, Christopher J., Munger, Steven C., O’Rahilly, Stephen, Ferguson-Smith, Anne C., Coll, Anthony P., Logan, Darren W.
Published in PLoS genetics (02.09.2020)
Published in PLoS genetics (02.09.2020)
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Journal Article
The Genome of C57BL/6J “Eve”, the Mother of the Laboratory Mouse Genome Reference Strain
Sarsani, Vishal Kumar, Raghupathy, Narayanan, Fiddes, Ian T, Armstrong, Joel, Thibaud-Nissen, Francoise, Zinder, Oraya, Bolisetty, Mohan, Howe, Kerstin, Hinerfeld, Doug, Ruan, Xiaoan, Rowe, Lucy, Barter, Mary, Ananda, Guruprasad, Paten, Benedict, Weinstock, George M, Churchill, Gary A, Wiles, Michael V, Schneider, Valerie A, Srivastava, Anuj, Reinholdt, Laura G
Published in G3 : genes - genomes - genetics (01.06.2019)
Published in G3 : genes - genomes - genetics (01.06.2019)
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Journal Article
YBR/EiJ mice: a new model of glaucoma caused by genes on chromosomes 4 and 17
Nair, K Saidas, Cosma, Mihai, Raghupathy, Narayanan, Sellarole, Michael A, Tolman, Nicholas G, de Vries, Wilhelmine, Smith, Richard S, John, Simon WM
Published in Disease models & mechanisms (01.08.2016)
Published in Disease models & mechanisms (01.08.2016)
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Journal Article
Su1986 CLASSIFYING IBD DISEASE SEVERITY FROM BULK RNASEQ TRANSCRIPTOMICS DATA USING A TRANSFORMER MODEL
Lewus, David, Saini, Jasmine, Wu, Chun, Raghupathy, Narayanan, Carty, Cara L., Hall, Aisling, Menard, Laurence, Baribaud, Frederic, Braun, Kim Van Naarden, Morris, Melody, Greenawalt, Danielle
Published in Gastroenterology (New York, N.Y. 1943) (18.05.2024)
Published in Gastroenterology (New York, N.Y. 1943) (18.05.2024)
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Journal Article
Hierarchical analysis of RNA-seq reads improves the accuracy of allele-specific expression
Raghupathy, Narayanan, Choi, Kwangbom, Vincent, Matthew J, Beane, Glen L, Sheppard, Keith S, Munger, Steven C, Korstanje, Ron, Pardo-Manual de Villena, Fernando, Churchill, Gary A
Published in Bioinformatics (01.07.2018)
Published in Bioinformatics (01.07.2018)
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Journal Article
Mapping the Effects of Genetic Variation on Chromatin State and Gene Expression Reveals Loci That Control Ground State Pluripotency
Skelly, Daniel A., Czechanski, Anne, Byers, Candice, Aydin, Selcan, Spruce, Catrina, Olivier, Chris, Choi, Kwangbom, Gatti, Daniel M., Raghupathy, Narayanan, Keele, Gregory R., Stanton, Alexander, Vincent, Matthew, Dion, Stephanie, Greenstein, Ian, Pankratz, Matthew, Porter, Devin K., Martin, Whitney, O’Connor, Callan, Qin, Wenning, Harrill, Alison H., Choi, Ted, Churchill, Gary A., Munger, Steven C., Baker, Christopher L., Reinholdt, Laura G.
Published in Cell stem cell (03.09.2020)
Published in Cell stem cell (03.09.2020)
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Journal Article
Author Correction: Defining the consequences of genetic variation on a proteome-wide scale
Chick, Joel M., Munger, Steven C., Simecek, Petr, Huttlin, Edward L., Choi, Kwangbom, Gatti, Daniel M., Raghupathy, Narayanan, Svenson, Karen L., Churchill, Gary A., Gygi, Steven P.
Published in Nature (London) (23.06.2022)
Published in Nature (London) (23.06.2022)
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Journal Article
Variation in histone configurations correlates with gene expression across nine inbred strains of mice
Tyler, Anna L., Spruce, Catrina, Kursawe, Romy, Haber, Annat, Ball, Robyn L., Pitman, Wendy A., Fine, Alexander D., Raghupathy, Narayanan, Walker, Michael, Philip, Vivek M., Baker, Christopher L., Mahoney, J. Matthew, Churchill, Gary A., Trowbridge, Jennifer J., Stitzel, Michael L., Paigen, Kenneth, Petkov, Petko M., Carter, Gregory W.
Published in Genome research (01.06.2023)
Published in Genome research (01.06.2023)
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Journal Article
RNA-Seq Alignment to Individualized Genomes Improves Transcript Abundance Estimates in Multiparent Populations
Munger, Steven C, Raghupathy, Narayanan, Choi, Kwangbom, Simons, Allen K, Gatti, Daniel M, Hinerfeld, Douglas A, Svenson, Karen L, Keller, Mark P, Attie, Alan D, Hibbs, Matthew A, Graber, Joel H, Chesler, Elissa J, Churchill, Gary A
Published in Genetics (Austin) (01.09.2014)
Published in Genetics (Austin) (01.09.2014)
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Journal Article
Natural genetic variation alters Alzheimer’s‐related gene expression modules in mice
Wells, Ann E., Raghupathy, Narayanan, Robledo, Raymond F., Gatti, Daniel M., Munger, Steven C., Phillips, Charles, Ndukum, Juliet, Wilcox, Troy, Graber, Joel, Hibbs, Matthew, Langston, Michael A., Churchill, Gary A., Carter, Gregory W., Chesler, Elissa J
Published in Alzheimer's & dementia (01.12.2020)
Published in Alzheimer's & dementia (01.12.2020)
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Journal Article
Natural genetic variation alters Alzheimer’s‐related gene expression modules in mice: Development of new models and analysis methods/novel assays and technologies
Wells, Ann E., Raghupathy, Narayanan, Robledo, Raymond F., Gatti, Daniel M., Munger, Steven C., Phillips, Charles, Ndukum, Juliet, Wilcox, Troy, Graber, Joel, Hibbs, Matthew, Langston, Michael A., Churchill, Gary A., Carter, Gregory W., Chesler, Elissa J
Published in Alzheimer's & dementia (01.12.2020)
Published in Alzheimer's & dementia (01.12.2020)
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Journal Article
Genetic Architectures of Quantitative Variation in RNA Editing Pathways
Gu, Tongjun, Gatti, Daniel M, Srivastava, Anuj, Snyder, Elizabeth M, Raghupathy, Narayanan, Simecek, Petr, Svenson, Karen L, Dotu, Ivan, Chuang, Jeffrey H, Keller, Mark P, Attie, Alan D, Braun, Robert E, Churchill, Gary A
Published in Genetics (Austin) (01.02.2016)
Published in Genetics (Austin) (01.02.2016)
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Journal Article
PRDM9 Drives Evolutionary Erosion of Hotspots in Mus musculus through Haplotype-Specific Initiation of Meiotic Recombination: e1004916
Baker, Christopher L, Kajita, Shimpei, Walker, Michael, Saxl, Ruth L, Raghupathy, Narayanan, Choi, Kwangbom, Petkov, Petko M, Paigen, Kenneth
Published in PLoS genetics (01.01.2015)
Published in PLoS genetics (01.01.2015)
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Journal Article
Genetic variation underlies epigenomic variation and the consequences of DNMT3A mutation in hematopoietic stem cells
Trowbridge, Jennifer, Bell, Rebecca, Spruce, Catrina, Tyler, Anna, Ball, Robyn, Philip, Vivek, Gatti, Dan, Raghupathy, Narayanan, Kurasawe, Romy, Young, Kira, Handel, Mary Ann, Stitzel, Michael, Churchill, Gary, Paigen, Kenneth, Petkov, Petko, Carter, Gregory
Published in Experimental hematology (01.09.2017)
Published in Experimental hematology (01.09.2017)
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Journal Article