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Single-cell proteomic and transcriptomic analysis of macrophage heterogeneity using SCoPE2
Specht, Harrison, Emmott, Edward, Petelski, Aleksandra A., Huffman, R. Gray, Perlman, David H., Serra, Marco, Kharchenko, Peter, Koller, Antonius, Slavov, Nikolai
Published in Genome Biology (27.01.2021)
Published in Genome Biology (27.01.2021)
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Journal Article
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments
Gatto, Laurent, Aebersold, Ruedi, Cox, Juergen, Demichev, Vadim, Derks, Jason, Emmott, Edward, Franks, Alexander M., Ivanov, Alexander R., Kelly, Ryan T., Khoury, Luke, Leduc, Andrew, MacCoss, Michael J., Nemes, Peter, Perlman, David H., Petelski, Aleksandra A., Rose, Christopher M., Schoof, Erwin M., Van Eyk, Jennifer, Vanderaa, Christophe, Yates, John R., Slavov, Nikolai
Published in Nature methods (01.03.2023)
Published in Nature methods (01.03.2023)
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Journal Article
The Architecture of a Scrambled Genome Reveals Massive Levels of Genomic Rearrangement during Development
Chen, Xiao, Bracht, John R., Goldman, Aaron David, Dolzhenko, Egor, Clay, Derek M., Swart, Estienne C., Perlman, David H., Doak, Thomas G., Stuart, Andrew, Amemiya, Chris T., Sebra, Robert P., Landweber, Laura F.
Published in Cell (28.08.2014)
Published in Cell (28.08.2014)
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Journal Article
Detection of cell–cell interactions via photocatalytic cell tagging
Oslund, Rob C., Reyes-Robles, Tamara, White, Cory H., Tomlinson, Jake H., Crotty, Kelly A., Bowman, Edward P., Chang, Dan, Peterson, Vanessa M., Li, Lixia, Frutos, Silvia, Vila-Perelló, Miquel, Vlerick, David, Cromie, Karen, Perlman, David H., Ingale, Sampat, Hara, Samantha D. O’, Roberts, Lee R., Piizzi, Grazia, Hett, Erik C., Hazuda, Daria J., Fadeyi, Olugbeminiyi O.
Published in Nature chemical biology (01.08.2022)
Published in Nature chemical biology (01.08.2022)
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Journal Article
Transmembrane domain of surface-exposed outer membrane lipoprotein RcsF is threaded through the lumen of β-barrel proteins
Konovalova, Anna, Perlman, David H., Cowles, Charles E., Silhavy, Thomas J.
Published in Proceedings of the National Academy of Sciences - PNAS (14.10.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (14.10.2014)
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Journal Article
An oligotrophic deep-subsurface community dependent on syntrophy is dominated by sulfur-driven autotrophic denitrifiers
Lau, Maggie C. Y., Kieft, Thomas L., Kuloyo, Olukayode, Linage-Alvarez, Borja, van Heerden, Esta, Lindsay, Melody R., Magnabosco, Cara, Wang, Wei, Wiggins, Jessica B., Guo, Ling, Perlman, David H., Kyin, Saw, Shwe, Henry H., Harris, Rachel L., Oh, Youmi, Yi, Min Joo, Purtschert, Roland, Slater, Greg F., Ono, Shuhei, Wei, Siwen, Li, Long, Lollar, Barbara Sherwood, Onstott, Tullis C.
Published in Proceedings of the National Academy of Sciences - PNAS (06.12.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (06.12.2016)
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Journal Article
Regulation of Yeast Pyruvate Kinase by Ultrasensitive Allostery Independent of Phosphorylation
Xu, Yi-Fan, Zhao, Xin, Glass, David S., Absalan, Farnaz, Perlman, David H., Broach, James R., Rabinowitz, Joshua D.
Published in Molecular cell (12.10.2012)
Published in Molecular cell (12.10.2012)
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Journal Article
Bisphosphoglycerate mutase controls serine pathway flux via 3-phosphoglycerate
Oslund, Rob C, Su, Xiaoyang, Haugbro, Michael, Kee, Jung-Min, Esposito, Mark, David, Yael, Wang, Boyuan, Ge, Eva, Perlman, David H, Kang, Yibin, Muir, Tom W, Rabinowitz, Joshua D
Published in Nature chemical biology (01.10.2017)
Published in Nature chemical biology (01.10.2017)
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Journal Article
Human cytomegalovirus pUL97 kinase induces global changes in the infected cell phosphoproteome
Oberstein, Adam, Perlman, David H., Shenk, Thomas, Terry, Laura J.
Published in Proteomics (Weinheim) (01.06.2015)
Published in Proteomics (Weinheim) (01.06.2015)
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Journal Article
Mitotic Control of Planar Cell Polarity by Polo-like Kinase 1
Shrestha, Rezma, Little, Katherine A., Tamayo, Joel V., Li, Wenyang, Perlman, David H., Devenport, Danelle
Published in Developmental cell (08.06.2015)
Published in Developmental cell (08.06.2015)
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Journal Article
Kinetic Flux Profiling Elucidates Two Independent Acetyl-CoA Biosynthetic Pathways in Plasmodium falciparum
Cobbold, Simon A., Vaughan, Ashley M., Lewis, Ian A., Painter, Heather J., Camargo, Nelly, Perlman, David H., Fishbaugher, Matthew, Healer, Julie, Cowman, Alan F., Kappe, Stefan H.I., Llinás, Manuel
Published in The Journal of biological chemistry (20.12.2013)
Published in The Journal of biological chemistry (20.12.2013)
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Journal Article
Efficient Retrograde Transport of Pseudorabies Virus within Neurons Requires Local Protein Synthesis in Axons
Koyuncu, Orkide O., Perlman, David H., Enquist, Lynn W.
Published in Cell host & microbe (16.01.2013)
Published in Cell host & microbe (16.01.2013)
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Journal Article
Amyloidogenic and Associated Proteins in Systemic Amyloidosis Proteome of Adipose Tissue
Lavatelli, Francesca, Perlman, David H., Spencer, Brian, Prokaeva, Tatiana, McComb, Mark E., Théberge, Roger, Connors, Lawreen H., Bellotti, Vittorio, Seldin, David C., Merlini, Giampaolo, Skinner, Martha, Costello, Catherine E.
Published in Molecular & cellular proteomics (01.08.2008)
Published in Molecular & cellular proteomics (01.08.2008)
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Journal Article
Regulation of Hepadnavirus Reverse Transcription by Dynamic Nucleocapsid Phosphorylation
Basagoudanavar, Suresh H., Perlman, David H., Hu, Jianming
Published in Journal of Virology (01.02.2007)
Published in Journal of Virology (01.02.2007)
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Journal Article
Multiplexed single-cell proteomics using SCoPE2
Petelski, Aleksandra A., Emmott, Edward, Leduc, Andrew, Huffman, R. Gray, Specht, Harrison, Perlman, David H., Slavov, Nikolai
Published in Nature protocols (01.12.2021)
Published in Nature protocols (01.12.2021)
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Journal Article
Reverse Transcription-Associated Dephosphorylation of Hepadnavirus Nucleocapsids
Perlman, David H., Berg, Eric A., O'Connor, Peter B., Costello, Catherine E., Hu, Jianming, Chisari, Francis V.
Published in Proceedings of the National Academy of Sciences - PNAS (21.06.2005)
Published in Proceedings of the National Academy of Sciences - PNAS (21.06.2005)
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Journal Article