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Discovery of unfixed endogenous retrovirus insertions in diverse human populations
Wildschutte, Julia Halo, Williams, Zachary H., Montesion, Meagan, Subramanian, Ravi P., Kidd, Jeffrey M., Coffin, John M.
Published in Proceedings of the National Academy of Sciences - PNAS (19.04.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (19.04.2016)
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Journal Article
A computational approach to distinguish somatic vs. germline origin of genomic alterations from deep sequencing of cancer specimens without a matched normal
Sun, James X., He, Yuting, Sanford, Eric, Montesion, Meagan, Frampton, Garrett M., Vignot, Stéphane, Soria, Jean-Charles, Ross, Jeffrey S., Miller, Vincent A., Stephens, Phil J., Lipson, Doron, Yelensky, Roman
Published in PLoS computational biology (07.02.2018)
Published in PLoS computational biology (07.02.2018)
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Journal Article
Somatic HLA Class I Loss Is a Widespread Mechanism of Immune Evasion Which Refines the Use of Tumor Mutational Burden as a Biomarker of Checkpoint Inhibitor Response
Montesion, Meagan, Murugesan, Karthikeyan, Jin, Dexter X., Sharaf, Radwa, Sanchez, Nora, Guria, Ameet, Minker, Max, Li, Gerald, Fisher, Virginia, Sokol, Ethan S., Pavlick, Dean C., Moore, Jay A., Braly, Alan, Singal, Gaurav, Fabrizio, David, Comment, Leah A., Rizvi, Naiyer A., Alexander, Brian M., Frampton, Garrett M., Hegde, Priti S., Albacker, Lee A.
Published in Cancer discovery (01.02.2021)
Published in Cancer discovery (01.02.2021)
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Journal Article
PD-L1 expression and tumor mutational burden are independent biomarkers in most cancers
Yarchoan, Mark, Albacker, Lee A., Hopkins, Alexander C., Montesion, Meagan, Murugesan, Karthikeyan, Vithayathil, Teena T., Zaidi, Neeha, Azad, Nilofer S., Laheru, Daniel A., Frampton, Garrett M., Jaffee, Elizabeth M.
Published in JCI insight (21.03.2019)
Published in JCI insight (21.03.2019)
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Journal Article
The Genomic Landscape of Merkel Cell Carcinoma and Clinicogenomic Biomarkers of Response to Immune Checkpoint Inhibitor Therapy
Knepper, Todd C., Montesion, Meagan, Russell, Jeffery S., Sokol, Ethan S., Frampton, Garrett M., Miller, Vincent A., Albacker, Lee A., McLeod, Howard L., Eroglu, Zeynep, Khushalani, Nikhil I., Sondak, Vernon K., Messina, Jane L., Schell, Michael J., DeCaprio, James A., Tsai, Kenneth Y., Brohl, Andrew S.
Published in Clinical cancer research (01.10.2019)
Published in Clinical cancer research (01.10.2019)
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Journal Article
Melanomas with activating RAF1 fusions: clinical, histopathologic, and molecular profiles
Williams, Erik A., Shah, Nikunj, Montesion, Meagan, Sharaf, Radwa, Pavlick, Dean C., Sokol, Ethan S., Alexander, Brian M., Venstrom, Jeff M., Elvin, Julia A., Ross, Jeffrey S., Tse, Julie Y., Mochel, Mark C.
Published in Modern pathology (01.08.2020)
Published in Modern pathology (01.08.2020)
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Journal Article
Comprehensive pan-cancer genomic landscape of KRAS altered cancers and real-world outcomes in solid tumors
Lee, Jessica K., Sivakumar, Smruthy, Schrock, Alexa B., Madison, Russell, Fabrizio, David, Gjoerup, Ole, Ross, Jeffrey S., Frampton, Garrett M., Napalkov, Pavel, Montesion, Meagan, Schutzman, Jennifer L., Ye, Xin, Hegde, Priti S., Nagasaka, Misako, Oxnard, Geoffrey R., Sokol, Ethan S., Ou, Sai-Hong Ignatius, Shi, Zhen
Published in NPJ precision oncology (09.12.2022)
Published in NPJ precision oncology (09.12.2022)
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Journal Article
Melanoma with in-frame deletion of MAP2K1: a distinct molecular subtype of cutaneous melanoma mutually exclusive from BRAF, NRAS, and NF1 mutations
Williams, Erik A., Montesion, Meagan, Shah, Nikunj, Sharaf, Radwa, Pavlick, Dean C., Sokol, Ethan S., Alexander, Brian, Venstrom, Jeff, Elvin, Julia A., Ross, Jeffrey S., Williams, Kevin Jon, Tse, Julie Y., Mochel, Mark C.
Published in Modern pathology (01.12.2020)
Published in Modern pathology (01.12.2020)
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Journal Article
CYLD mutation characterizes a subset of HPV-positive head and neck squamous cell carcinomas with distinctive genomics and frequent cylindroma-like histologic features
Williams, Erik A., Montesion, Meagan, Alexander, Brian M., Ramkissoon, Shakti H., Elvin, Julia A., Ross, Jeffrey S., Williams, Kevin Jon, Glomski, Krzysztof, Bledsoe, Jacob R., Tse, Julie Y., Mochel, Mark C.
Published in Modern pathology (01.02.2021)
Published in Modern pathology (01.02.2021)
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Journal Article
Allele-specific HLA LOH in solid tumors: distinct patterns by tumor type and potential prognostic relevance
Sewastianik, Tomasz, Roy, Christian, Gormally, Michael V, Montesion, Meagan, Halvey, Patrick, Jindal, Aastha, Lam, Hubert, Schoenfeld, Adam, Klebanoff, Christopher A, Opiteck, Gregory J, Nagorsen, Dirk
Published in Journal for immunotherapy of cancer (09.09.2025)
Published in Journal for immunotherapy of cancer (09.09.2025)
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Journal Article
Nivolumab plus low-dose ipilimumab in hypermutated HER2-negative metastatic breast cancer: a phase II trial (NIMBUS)
Barroso-Sousa, Romualdo, Zanudo, Jorge Gomez Tejeda, Li, Tianyu, Reddy, Sangeetha M., Emens, Leisha A., Kuntz, Thomas M., Silva, Carolina Alves Costa, AlDubayan, Saud H., Chu, Hoyin, Overmoyer, Beth, Lange, Paulina, DiLullo, Molly K., Montesion, Meagan, Kasparian, Julie, Hughes, Melissa E., Attaya, Victoria, Basta, Ameer, Lin, Nancy U., Tayob, Nabihah, Jeselsohn, Rinath, Mittendorf, Elizabeth A., Tolaney, Sara M.
Published in Nature communications (13.05.2025)
Published in Nature communications (13.05.2025)
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Journal Article
Promoter expression of HERV-K (HML-2) provirus-derived sequences is related to LTR sequence variation and polymorphic transcription factor binding sites
Montesion, Meagan, Williams, Zachary H., Subramanian, Ravi P., Kuperwasser, Charlotte, Coffin, John M.
Published in Retrovirology (20.08.2018)
Published in Retrovirology (20.08.2018)
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Journal Article
Tumor Infiltrating Lymphocyte Expression of PD-1 Predicts Response to Anti-PD-1/PD-L1 Immunotherapy
Bevins, Nicholas J., Okamura, Ryosuke, Montesion, Meagan, Adashek, Jacob J., Goodman, Aaron M., Kurzrock, Razelle
Published in Journal of Immunotherapy and Precision Oncology (01.11.2022)
Published in Journal of Immunotherapy and Precision Oncology (01.11.2022)
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Journal Article
Relationship among DDR gene mutations, TMB and PD-L1 in solid tumour genomes identified using clinically actionable biomarker assays
Wang, Danyi, Elenbaas, Brian, Murugesan, Karthikeyan, Shah, Kunal, Montesion, Meagan, Gounaris, Ioannis, Scheuenpflug, Juergen, Locatelli, Giuseppe, Feng, Zheng
Published in NPJ precision oncology (11.10.2023)
Published in NPJ precision oncology (11.10.2023)
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Journal Article
Advanced cancers amongst individuals of African ancestry exhibit an almost five-fold higher prevalence of high-risk HPV types not covered by the current 9-valent vaccine
Williams, Erik, Newberg, Justin, Montesion, Meagan, Mata, Douglas, Werth, Adrienne, Williams, Kevin Jon, Alexander, Brian, Huang, Richard, Ramkissoon, Shakti, Lin, Douglas, Elvin, Julia
Published in Gynecologic oncology (01.08.2021)
Published in Gynecologic oncology (01.08.2021)
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Journal Article
CYLD-mutant cylindroma-like basaloid carcinoma of the anus: a genetically and morphologically distinct class of HPV-related anal carcinoma
Williams, Erik A., Montesion, Meagan, Sharaf, Radwa, Corines, James, Patel, Parth J., Gillespie, Brendan J., Pavlick, Dean C., Sokol, Ethan S., Alexander, Brian M., Williams, Kevin Jon, Elvin, Julia A., Ross, Jeffrey S., Ramkissoon, Shakti H., Hemmerich, Amanda C., Tse, Julie Y., Mochel, Mark C.
Published in Modern pathology (01.12.2020)
Published in Modern pathology (01.12.2020)
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Journal Article
Multiple configurations of EGFR exon 20 resistance mutations after first- and third-generation EGFR TKI treatment affect treatment options in NSCLC
Goldberg, Michael E., Montesion, Meagan, Young, Lauren, Suh, James, Greenbowe, Joel, Kennedy, Mark, Giaccone, Giuseppe, Akerley, Wallace L., Dowlati, Afshin, Creelan, Benjamin C., Hicks, James K., Hesketh, Paul J., Kelly, Karen L., Riess, Jonathan W., Miller, Vincent A., Stephens, Philip J., Frampton, Garrett M., Ali, Siraj, Gregg, Jeffrey P., Albacker, Lee A.
Published in PloS one (27.11.2018)
Published in PloS one (27.11.2018)
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Journal Article
Pan-cancer landscape of CD274 (PD-L1) copy number changes in 244 584 patient samples and the correlation with PD-L1 protein expression
Huang, Richard S.P., Murugesan, Karthikeyan, Montesion, Meagan, Pavlick, Dean C., Mata, Douglas A., Hiemenz, Matthew C., Decker, Brennan, Frampton, Garrett, Albacker, Lee A., Ross, Jeffrey S.
Published in Journal for immunotherapy of cancer (01.05.2021)
Published in Journal for immunotherapy of cancer (01.05.2021)
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Journal Article