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Global chemical effects of the microbiome include new bile-acid conjugations
Quinn, Robert A., Melnik, Alexey V., Vrbanac, Alison, Fu, Ting, Patras, Kathryn A., Christy, Mitchell P., Bodai, Zsolt, Belda-Ferre, Pedro, Tripathi, Anupriya, Chung, Lawton K., Downes, Michael, Welch, Ryan D., Quinn, Melissa, Humphrey, Greg, Panitchpakdi, Morgan, Weldon, Kelly C., Aksenov, Alexander, da Silva, Ricardo, Avila-Pacheco, Julian, Clish, Clary, Bae, Sena, Mallick, Himel, Franzosa, Eric A., Lloyd-Price, Jason, Bussell, Robert, Thron, Taren, Nelson, Andrew T., Wang, Mingxun, Leszczynski, Eric, Vargas, Fernando, Gauglitz, Julia M., Meehan, Michael J., Gentry, Emily, Arthur, Timothy D., Komor, Alexis C., Poulsen, Orit, Boland, Brigid S., Chang, John T., Sandborn, William J., Lim, Meerana, Garg, Neha, Lumeng, Julie C., Xavier, Ramnik J., Kazmierczak, Barbara I., Jain, Ruchi, Egan, Marie, Rhee, Kyung E., Ferguson, David, Raffatellu, Manuela, Vlamakis, Hera, Haddad, Gabriel G., Siegel, Dionicio, Huttenhower, Curtis, Mazmanian, Sarkis K., Evans, Ronald M., Nizet, Victor, Knight, Rob, Dorrestein, Pieter C.
Published in Nature (London) (05.03.2020)
Published in Nature (London) (05.03.2020)
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Journal Article
Spatial chemistry of citrus reveals molecules bactericidal to Candidatus Liberibacter asiaticus
A. Aksenov, Alexander, Blacutt, Alex, Ginnan, Nichole, Rolshausen, Philippe E., V. Melnik, Alexey, Lotfi, Ali, C. Gentry, Emily, Ramasamy, Manikandan, Zuniga, Cristal, Zengler, Karsten, Mandadi, Kranthi K., McCollum, Greg, Dorrestein, Pieter C., Roper, M. Caroline
Published in Scientific reports (02.09.2024)
Published in Scientific reports (02.09.2024)
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Journal Article
The impact of skin care products on skin chemistry and microbiome dynamics
Bouslimani, Amina, da Silva, Ricardo, Kosciolek, Tomasz, Janssen, Stefan, Callewaert, Chris, Amir, Amnon, Dorrestein, Kathleen, Melnik, Alexey V., Zaramela, Livia S., Kim, Ji-Nu, Humphrey, Gregory, Schwartz, Tara, Sanders, Karenina, Brennan, Caitriona, Luzzatto-Knaan, Tal, Ackermann, Gail, McDonald, Daniel, Zengler, Karsten, Knight, Rob, Dorrestein, Pieter C.
Published in BMC biology (12.06.2019)
Published in BMC biology (12.06.2019)
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Journal Article
3D molecular cartography using LC-MS facilitated by Optimus and 'ili software
Protsyuk, Ivan, Melnik, Alexey V, Nothias, Louis-felix, Rappez, Luca, Phapale, Prasad, Aksenov, Alexander A, Bouslimani, Amina, Ryazanov, Sergey, Dorrestein, Pieter C, Alexandrov, Theodore
Published in Nature protocols (01.01.2018)
Published in Nature protocols (01.01.2018)
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Journal Article
Identification of the Bacterial Biosynthetic Gene Clusters of the Oral Microbiome Illuminates the Unexplored Social Language of Bacteria during Health and Disease
Aleti, Gajender, Baker, Jonathon L., Tang, Xiaoyu, Alvarez, Ruth, Dinis, Márcia, Tran, Nini C., Melnik, Alexey V., Zhong, Cuncong, Ernst, Madeleine, Dorrestein, Pieter C., Edlund, Anna
Published in mBio (16.04.2019)
Published in mBio (16.04.2019)
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Journal Article
Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages
Gauglitz, Julia M., Aceves, Christine M., Aksenov, Alexander A., Aleti, Gajender, Almaliti, Jehad, Bouslimani, Amina, Brown, Elizabeth A., Campeau, Anaamika, Caraballo-Rodríguez, Andrés Mauricio, Chaar, Rama, da Silva, Ricardo R., Demko, Alyssa M., Di Ottavio, Francesca, Elijah, Emmanuel, Ernst, Madeleine, Ferguson, L. Paige, Holmes, Xavier, Jarmusch, Alan K., Jiang, Lingjing, Kang, Kyo Bin, Koester, Irina, Kwan, Brian, Li, Jie, Li, Yueying, Melnik, Alexey V., Molina-Santiago, Carlos, Ni, Bohan, Oom, Aaron L., Panitchpakdi, Morgan W., Petras, Daniel, Quinn, Robert, Sikora, Nicole, Spengler, Katharina, Teke, Bahar, Tripathi, Anupriya, Ul-Hasan, Sabah, van der Hooft, Justin J.J., Vargas, Fernando, Vrbanac, Alison, Vu, Anthony Q., Wang, Steven C., Weldon, Kelly, Wilson, Kayla, Wozniak, Jacob M., Yoon, Michael, Bandeira, Nuno, Dorrestein, Pieter C.
Published in Food chemistry (01.01.2020)
Published in Food chemistry (01.01.2020)
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Journal Article
Microbial and Nonvolatile Chemical Diversities of Chinese Dark Teas Are Differed by Latitude and Pile Fermentation
Kong, Ya-Shuai, Ren, Hong-Yu, Liu, Rui, da Silva, Ricardo R., Aksenov, Alexander A., Melnik, Alexey V., Zhao, Ming, Le, Miao-Miao, Ren, Zhi-Wei, Xu, Feng-Qing, Yan, Xiao-Wei, Yu, Li-Jun, Zhou, Yu, Xie, Zhong-Wen, Li, Da-Xiang, Wan, Xiao-Chun, Long, Yan-Hua, Xu, Zhenjiang Zech, Ling, Tie-Jun
Published in Journal of agricultural and food chemistry (11.05.2022)
Published in Journal of agricultural and food chemistry (11.05.2022)
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Journal Article
Prioritizing Natural Product Diversity in a Collection of 146 Bacterial Strains Based on Growth and Extraction Protocols
Crüsemann, Max, O’Neill, Ellis C, Larson, Charles B, Melnik, Alexey V, Floros, Dimitrios J, da Silva, Ricardo R, Jensen, Paul R, Dorrestein, Pieter C, Moore, Bradley S
Published in Journal of natural products (Washington, D.C.) (24.03.2017)
Published in Journal of natural products (Washington, D.C.) (24.03.2017)
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Journal Article
Lifestyle chemistries from phones for individual profiling
Bouslimani, Amina, Melnik, Alexey V., Xu, Zhenjiang, Amir, Amnon, da Silva, Ricardo R., Wang, Mingxun, Bandeira, Nuno, Alexandrov, Theodore, Knight, Rob, Dorrestein, Pieter C.
Published in Proceedings of the National Academy of Sciences - PNAS (29.11.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (29.11.2016)
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Journal Article
Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics
Bittremieux, Wout, Avalon, Nicole E., Thomas, Sydney P., Kakhkhorov, Sarvar A., Aksenov, Alexander A., Gomes, Paulo Wender P., Aceves, Christine M., Caraballo-Rodríguez, Andrés Mauricio, Gauglitz, Julia M., Gerwick, William H., Huan, Tao, Jarmusch, Alan K., Kaddurah-Daouk, Rima F., Kang, Kyo Bin, Kim, Hyun Woo, Kondić, Todor, Mannochio-Russo, Helena, Meehan, Michael J., Melnik, Alexey V., Nothias, Louis-Felix, O’Donovan, Claire, Panitchpakdi, Morgan, Petras, Daniel, Schmid, Robin, Schymanski, Emma L., van der Hooft, Justin J. J., Weldon, Kelly C., Yang, Heejung, Xing, Shipei, Zemlin, Jasmine, Wang, Mingxun, Dorrestein, Pieter C.
Published in Nature communications (20.12.2023)
Published in Nature communications (20.12.2023)
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Journal Article
Mass Spectrometry Uncovers the Role of Surfactin as an Interspecies Recruitment Factor
Luzzatto-Knaan, Tal, Melnik, Alexey V, Dorrestein, Pieter C
Published in ACS chemical biology (15.03.2019)
Published in ACS chemical biology (15.03.2019)
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Journal Article
Coupling Targeted and Untargeted Mass Spectrometry for Metabolome-Microbiome-Wide Association Studies of Human Fecal Samples
Melnik, Alexey V, da Silva, Ricardo R, Hyde, Embriette R, Aksenov, Alexander A, Vargas, Fernando, Bouslimani, Amina, Protsyuk, Ivan, Jarmusch, Alan K, Tripathi, Anupriya, Alexandrov, Theodore, Knight, Rob, Dorrestein, Pieter C
Published in Analytical chemistry (Washington) (18.07.2017)
Published in Analytical chemistry (Washington) (18.07.2017)
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Journal Article
Natural products as mediators of disease
Garg, Neha, Luzzatto-Knaan, Tal, Melnik, Alexey V, Caraballo-Rodríguez, Andrés Mauricio, Floros, Dimitrios J, Petras, Daniel, Gregor, Rachel, Dorrestein, Pieter C, Phelan, Vanessa V
Published in Natural product reports (01.02.2017)
Published in Natural product reports (01.02.2017)
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Journal Article
Mass spectrometry tools and workflows for revealing microbial chemistry
Luzzatto-Knaan, Tal, Melnik, Alexey V., Dorrestein, Pieter C.
Published in Analyst (London) (07.08.2015)
Published in Analyst (London) (07.08.2015)
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Journal Article
Author Correction: Spatial chemistry of citrus reveals molecules bactericidal to Candidatus Liberibacter asiaticus
Aksenov, Alexander A., Blacutt, Alex, Ginnan, Nichole, Rolshausen, Philippe E., Melnik, Alexey V., Ali, Lotfi, Gentry, Emily C., Ramasamy, Manikandan, Zuniga, Cristal, Zengler, Karsten, Mandadi, Kranthi K., McCollum, Greg, Dorrestein, Pieter C., Roper, M. Caroline
Published in Scientific reports (28.02.2025)
Published in Scientific reports (28.02.2025)
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Journal Article
Feature-Based Molecular Networking Analysis of the Metabolites Produced by In Vitro Solid-State Fermentation Reveals Pathways for the Bioconversion of Epigallocatechin Gallate
Xie, Hao-Fen, Kong, Ya-Shuai, Li, Ru-Ze, Nothias, Louis-Félix, Melnik, Alexey V, Zhang, Hong, Liu, Lu-Lu, An, Ting-Ting, Liu, Rui, Yang, Zi, Ke, Jia-Ping, Zhang, Peng, Bao, Guan-Hu, Xie, Zhong-Wen, Li, Da-Xiang, Wan, Xiao-Chun, Dai, Qian-Ying, Zhang, Liang, Zhao, Ming, An, Mao-Qiang, Long, Yan-Hua, Ling, Tie-Jun
Published in Journal of agricultural and food chemistry (29.07.2020)
Published in Journal of agricultural and food chemistry (29.07.2020)
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Journal Article
Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome
Tripathi, Anupriya, Melnik, Alexey V., Xue, Jin, Poulsen, Orit, Meehan, Michael J., Humphrey, Gregory, Jiang, Lingjing, Ackermann, Gail, McDonald, Daniel, Zhou, Dan, Knight, Rob, Dorrestein, Pieter C., Haddad, Gabriel G.
Published in mSystems (01.05.2018)
Published in mSystems (01.05.2018)
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Journal Article
Blackcurrant Anthocyanins Attenuate Estrogen -Deficiency-Induced Bone Loss through Modulating Microbial-Derived Short-Chain Carboxylic Acids and Phytoestrogen Metabolites in Peri- and Early Postmenopausal Women
Nosal, Briana M., Thornton, Staci N., Melnik, Alexey V., Lotfi, Ali, Mofrad, Manije Darooghegi, Aksenov, Alexander, Lee, Elaine Choung-Hee, Chun, Ock K.
Published in Metabolites (01.10.2024)
Published in Metabolites (01.10.2024)
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Journal Article
The Molecular Effect of Wearing Silver-Threaded Clothing on the Human Skin
Melnik, Alexey V., Callewaert, Chris, Dorrestein, Kathleen, Broadhead, Rosie, Minich, Jeremiah J., Ernst, Madeleine, Humphrey, Greg, Ackermann, Gail, Gathercole, Rob, Aksenov, Alexander A., Knight, Rob, Dorrestein, Pieter C.
Published in mSystems (23.02.2023)
Published in mSystems (23.02.2023)
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Journal Article