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Diet–microbiota interactions and personalized nutrition
Kolodziejczyk, Aleksandra A., Zheng, Danping, Elinav, Eran
Published in Nature reviews. Microbiology (01.12.2019)
Published in Nature reviews. Microbiology (01.12.2019)
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Journal Article
Bile acids in glucose metabolism in health and disease
Shapiro, Hagit, Kolodziejczyk, Aleksandra A., Halstuch, Daniel, Elinav, Eran
Published in The Journal of experimental medicine (05.02.2018)
Published in The Journal of experimental medicine (05.02.2018)
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Journal Article
The role of the microbiome in NAFLD and NASH
Kolodziejczyk, Aleksandra A, Zheng, Danping, Shibolet, Oren, Elinav, Eran
Published in EMBO molecular medicine (01.02.2019)
Published in EMBO molecular medicine (01.02.2019)
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Journal Article
The Technology and Biology of Single-Cell RNA Sequencing
Kolodziejczyk, Aleksandra A., Kim, Jong Kyoung, Svensson, Valentine, Marioni, John C., Teichmann, Sarah A.
Published in Molecular cell (21.05.2015)
Published in Molecular cell (21.05.2015)
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Journal Article
The spatiotemporal program of zonal liver regeneration following acute injury
Ben-Moshe, Shani, Veg, Tamar, Manco, Rita, Dan, Stav, Papinutti, Delfina, Lifshitz, Aviezer, Kolodziejczyk, Aleksandra A., Bahar Halpern, Keren, Elinav, Eran, Itzkovitz, Shalev
Published in Cell stem cell (02.06.2022)
Published in Cell stem cell (02.06.2022)
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Journal Article
Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation
Kolodziejczyk, Aleksandra A., Kim, Jong Kyoung, Tsang, Jason C.H., Ilicic, Tomislav, Henriksson, Johan, Natarajan, Kedar N., Tuck, Alex C., Gao, Xuefei, Bühler, Marc, Liu, Pentao, Marioni, John C., Teichmann, Sarah A.
Published in Cell stem cell (01.10.2015)
Published in Cell stem cell (01.10.2015)
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Journal Article
Acute liver failure is regulated by MYC- and microbiome-dependent programs
Kolodziejczyk, Aleksandra A., Federici, Sara, Zmora, Niv, Mohapatra, Gayatree, Dori-Bachash, Mally, Hornstein, Shanni, Leshem, Avner, Reuveni, Debby, Zigmond, Ehud, Tobar, Ana, Salame, Tomer Meir, Harmelin, Alon, Shlomai, Amir, Shapiro, Hagit, Amit, Ido, Elinav, Eran
Published in Nature medicine (01.12.2020)
Published in Nature medicine (01.12.2020)
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Journal Article
Single-Cell RNA Sequencing Reveals T Helper Cells Synthesizing Steroids De Novo to Contribute to Immune Homeostasis
Mahata, Bidesh, Zhang, Xiuwei, Kolodziejczyk, Aleksandra A., Proserpio, Valentina, Haim-Vilmovsky, Liora, Taylor, Angela E., Hebenstreit, Daniel, Dingler, Felix A., Moignard, Victoria, Göttgens, Berthold, Arlt, Wiebke, McKenzie, Andrew N.J., Teichmann, Sarah A.
Published in Cell reports (Cambridge) (22.05.2014)
Published in Cell reports (Cambridge) (22.05.2014)
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Journal Article
Gut microbiota modulates weight gain in mice after discontinued smoke exposure
Fluhr, Leviel, Mor, Uria, Kolodziejczyk, Aleksandra A., Dori-Bachash, Mally, Leshem, Avner, Itav, Shlomik, Cohen, Yotam, Suez, Jotham, Zmora, Niv, Moresi, Claudia, Molina, Shahar, Ayalon, Niv, Valdés-Mas, Rafael, Hornstein, Shanni, Karbi, Hodaya, Kviatcovsky, Denise, Livne, Adi, Bukimer, Aurelie, Eliyahu-Miller, Shimrit, Metz, Alona, Brandis, Alexander, Mehlman, Tevie, Kuperman, Yael, Tsoory, Michael, Stettner, Noa, Harmelin, Alon, Shapiro, Hagit, Elinav, Eran
Published in Nature (London) (23.12.2021)
Published in Nature (London) (23.12.2021)
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Journal Article
Single-cell transcriptomic reconstruction reveals cell cycle and multi-lineage differentiation defects in Bcl11a-deficient hematopoietic stem cells
Tsang, Jason C. H., Yu, Yong, Burke, Shannon, Buettner, Florian, Wang, Cui, Kolodziejczyk, Aleksandra A., Teichmann, Sarah A., Lu, Liming, Liu, Pentao
Published in Genome Biology (21.09.2015)
Published in Genome Biology (21.09.2015)
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Journal Article
Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression
Kar, Gozde, Kim, Jong Kyoung, Kolodziejczyk, Aleksandra A., Natarajan, Kedar Nath, Torlai Triglia, Elena, Mifsud, Borbala, Elderkin, Sarah, Marioni, John C., Pombo, Ana, Teichmann, Sarah A.
Published in Nature communications (26.06.2017)
Published in Nature communications (26.06.2017)
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Journal Article
Dysbiosis and the immune system
Levy, Maayan, Kolodziejczyk, Aleksandra A., Thaiss, Christoph A., Elinav, Eran
Published in Nature reviews. Immunology (01.04.2017)
Published in Nature reviews. Immunology (01.04.2017)
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Journal Article
Comparison of antiviral responses in two bat species reveals conserved and divergent innate immune pathways
Schneor, Lilach, Kaltenbach, Stefan, Friedman, Sivan, Tussia-Cohen, Dafna, Nissan, Yomiran, Shuler, Gal, Fraimovitch, Evgeny, Kolodziejczyk, Aleksandra A., Weinberg, Maya, Donati, Giacomo, Teeling, Emma C., Yovel, Yossi, Hagai, Tzachi
Published in iScience (18.08.2023)
Published in iScience (18.08.2023)
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Journal Article
Commensal inter-bacterial interactions shaping the microbiota
Kern, Lara, Abdeen, Suhaib K, Kolodziejczyk, Aleksandra A, Elinav, Eran
Published in Current opinion in microbiology (01.10.2021)
Published in Current opinion in microbiology (01.10.2021)
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Journal Article
Accounting for technical noise in single-cell RNA-seq experiments
Brennecke, Philip, Anders, Simon, Kim, Jong Kyoung, Kołodziejczyk, Aleksandra A, Zhang, Xiuwei, Proserpio, Valentina, Baying, Bianka, Benes, Vladimir, Teichmann, Sarah A, Marioni, John C, Heisler, Marcus G
Published in Nature methods (01.11.2013)
Published in Nature methods (01.11.2013)
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Journal Article
Characterizing noise structure in single-cell RNA-seq distinguishes genuine from technical stochastic allelic expression
Kim, Jong Kyoung, Kolodziejczyk, Aleksandra A., Ilicic, Tomislav, Teichmann, Sarah A., Marioni, John C.
Published in Nature communications (22.10.2015)
Published in Nature communications (22.10.2015)
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Journal Article
Aging increases cell-to-cell transcriptional variability upon immune stimulation
Martinez-Jimenez, Celia Pilar, Eling, Nils, Chen, Hung-Chang, Vallejos, Catalina A., Kolodziejczyk, Aleksandra A., Connor, Frances, Stojic, Lovorka, Rayner, Timothy F., Stubbington, Michael J. T., Teichmann, Sarah A., de la Roche, Maike, Marioni, John C., Odom, Duncan T.
Published in Science (American Association for the Advancement of Science) (31.03.2017)
Published in Science (American Association for the Advancement of Science) (31.03.2017)
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Journal Article
Establishment of mouse expanded potential stem cells
Yang, Jian, Ryan, David J., Wang, Wei, Tsang, Jason Cheuk-Ho, Lan, Guocheng, Masaki, Hideki, Gao, Xuefei, Antunes, Liliana, Yu, Yong, Zhu, Zhexin, Wang, Juexuan, Kolodziejczyk, Aleksandra A., Campos, Lia S., Wang, Cui, Yang, Fengtang, Zhong, Zhen, Fu, Beiyuan, Eckersley-Maslin, Melanie A., Woods, Michael, Tanaka, Yosuke, Chen, Xi, Wilkinson, Adam C., Bussell, James, White, Jacqui, Ramirez-Solis, Ramiro, Reik, Wolf, Göttgens, Berthold, Teichmann, Sarah A., Tam, Patrick P. L., Nakauchi, Hiromitsu, Zou, Xiangang, Lu, Liming, Liu, Pentao
Published in Nature (London) (19.10.2017)
Published in Nature (London) (19.10.2017)
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Journal Article
Cell-type specialization is encoded by specific chromatin topologies
Winick-Ng, Warren, Kukalev, Alexander, Harabula, Izabela, Zea-Redondo, Luna, Szabó, Dominik, Meijer, Mandy, Serebreni, Leonid, Zhang, Yingnan, Bianco, Simona, Chiariello, Andrea M., Irastorza-Azcarate, Ibai, Thieme, Christoph J., Sparks, Thomas M., Carvalho, Sílvia, Fiorillo, Luca, Musella, Francesco, Irani, Ehsan, Torlai Triglia, Elena, Kolodziejczyk, Aleksandra A., Abentung, Andreas, Apostolova, Galina, Paul, Eleanor J., Franke, Vedran, Kempfer, Rieke, Akalin, Altuna, Teichmann, Sarah A., Dechant, Georg, Ungless, Mark A., Nicodemi, Mario, Welch, Lonnie, Castelo-Branco, Gonçalo, Pombo, Ana
Published in Nature (London) (25.11.2021)
Published in Nature (London) (25.11.2021)
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Journal Article