Vyzkoušejte nový nástroj s podporou AI
Summon Research Assistant
BETA
Cell competition during reprogramming gives rise to dominant clones
Shakiba, Nika, Fahmy, Ahmed, Jayakumaran, Gowtham, McGibbon, Sophie, David, Laurent, Trcka, Daniel, Elbaz, Judith, Puri, Mira C., Nagy, Andras, van der Kooy, Derek, Goyal, Sidhartha, Wrana, Jeffrey L., Zandstra, Peter W.
Published in Science (American Association for the Advancement of Science) (26.04.2019)
Published in Science (American Association for the Advancement of Science) (26.04.2019)
Get full text
Journal Article
Mutational landscape of metastatic cancer revealed from prospective clinical sequencing of 10,000 patients
Zehir, Ahmet, Benayed, Ryma, Shah, Ronak H, Syed, Aijazuddin, Middha, Sumit, Kim, Hyunjae R, Srinivasan, Preethi, Gao, Jianjiong, Chakravarty, Debyani, Devlin, Sean M, Hellmann, Matthew D, Barron, David A, Schram, Alison M, Hameed, Meera, Dogan, Snjezana, Ross, Dara S, Hechtman, Jaclyn F, DeLair, Deborah F, Yao, JinJuan, Mandelker, Diana L, Cheng, Donavan T, Chandramohan, Raghu, Mohanty, Abhinita S, Ptashkin, Ryan N, Jayakumaran, Gowtham, Prasad, Meera, Syed, Mustafa H, Rema, Anoop Balakrishnan, Liu, Zhen Y, Nafa, Khedoudja, Borsu, Laetitia, Sadowska, Justyna, Casanova, Jacklyn, Bacares, Ruben, Kiecka, Iwona J, Razumova, Anna, Son, Julie B, Stewart, Lisa, Baldi, Tessara, Mullaney, Kerry A, Al-Ahmadie, Hikmat, Vakiani, Efsevia, Abeshouse, Adam A, Penson, Alexander V, Jonsson, Philip, Camacho, Niedzica, Chang, Matthew T, Won, Helen H, Gross, Benjamin E, Kundra, Ritika, Heins, Zachary J, Chen, Hsiao-Wei, Phillips, Sarah, Zhang, Hongxin, Wang, Jiaojiao, Ochoa, Angelica, Wills, Jonathan, Eubank, Michael, Thomas, Stacy B, Gardos, Stuart M, Reales, Dalicia N, Galle, Jesse, Durany, Robert, Cambria, Roy, Abida, Wassim, Cercek, Andrea, Feldman, Darren R, Gounder, Mrinal M, Hakimi, A Ari, Harding, James J, Iyer, Gopa, Janjigian, Yelena Y, Jordan, Emmet J, Kelly, Ciara M, Lowery, Maeve A, Morris, Luc G T, Omuro, Antonio M, Raj, Nitya, Razavi, Pedram, Shoushtari, Alexander N, Shukla, Neerav, Soumerai, Tara E, Varghese, Anna M, Yaeger, Rona, Coleman, Jonathan, Bochner, Bernard, Riely, Gregory J, Saltz, Leonard B, Scher, Howard I, Sabbatini, Paul J, Robson, Mark E, Klimstra, David S, Taylor, Barry S, Baselga, Jose, Schultz, Nikolaus, Hyman, David M, Arcila, Maria E, Solit, David B, Ladanyi, Marc, Berger, Michael F
Published in Nature medicine (01.06.2017)
Published in Nature medicine (01.06.2017)
Get full text
Journal Article
Clinical Sequencing Defines the Genomic Landscape of Metastatic Colorectal Cancer
Yaeger, Rona, Chatila, Walid K., Lipsyc, Marla D., Hechtman, Jaclyn F., Cercek, Andrea, Sanchez-Vega, Francisco, Jayakumaran, Gowtham, Middha, Sumit, Zehir, Ahmet, Donoghue, Mark T.A., You, Daoqi, Viale, Agnes, Kemeny, Nancy, Segal, Neil H., Stadler, Zsofia K., Varghese, Anna M., Kundra, Ritika, Gao, Jianjiong, Syed, Aijazuddin, Hyman, David M., Vakiani, Efsevia, Rosen, Neal, Taylor, Barry S., Ladanyi, Marc, Berger, Michael F., Solit, David B., Shia, Jinru, Saltz, Leonard, Schultz, Nikolaus
Published in Cancer cell (08.01.2018)
Published in Cancer cell (08.01.2018)
Get full text
Journal Article
Structure–function analysis of oncogenic EGFR Kinase Domain Duplication reveals insights into activation and a potential approach for therapeutic targeting
Du, Zhenfang, Brown, Benjamin P., Kim, Soyeon, Ferguson, Donna, Pavlick, Dean C., Jayakumaran, Gowtham, Benayed, Ryma, Gallant, Jean-Nicolas, Zhang, Yun-Kai, Yan, Yingjun, Red-Brewer, Monica, Ali, Siraj M., Schrock, Alexa B., Zehir, Ahmet, Ladanyi, Marc, Smith, Adam W., Meiler, Jens, Lovly, Christine M.
Published in Nature communications (02.03.2021)
Published in Nature communications (02.03.2021)
Get full text
Journal Article
Accelerating Discovery of Functional Mutant Alleles in Cancer
Chang, Matthew T., Bhattarai, Tripti Shrestha, Schram, Alison M., Bielski, Craig M., Donoghue, Mark T.A., Jonsson, Philip, Chakravarty, Debyani, Phillips, Sarah, Kandoth, Cyriac, Penson, Alexander, Gorelick, Alexander, Shamu, Tambudzai, Patel, Swati, Harris, Christopher, Gao, JianJiong, Sumer, Selcuk Onur, Kundra, Ritika, Razavi, Pedram, Li, Bob T., Reales, Dalicia N., Socci, Nicholas D., Jayakumaran, Gowtham, Zehir, Ahmet, Benayed, Ryma, Arcila, Maria E., Chandarlapaty, Sarat, Ladanyi, Marc, Schultz, Nikolaus, Baselga, José, Berger, Michael F., Rosen, Neal, Solit, David B., Hyman, David M., Taylor, Barry S.
Published in Cancer discovery (01.02.2018)
Published in Cancer discovery (01.02.2018)
Get full text
Journal Article
Enhanced specificity of clinical high-sensitivity tumor mutation profiling in cell-free DNA via paired normal sequencing using MSK-ACCESS
Rose Brannon, A., Jayakumaran, Gowtham, Diosdado, Monica, Patel, Juber, Razumova, Anna, Hu, Yu, Meng, Fanli, Haque, Mohammad, Sadowska, Justyna, Murphy, Brian J., Baldi, Tessara, Johnson, Ian, Ptashkin, Ryan, Hasan, Maysun, Srinivasan, Preethi, Rema, Anoop Balakrishnan, Rijo, Ivelise, Agarunov, Aaron, Won, Helen, Perera, Dilmi, Brown, David N., Samoila, Aliaksandra, Jing, Xiaohong, Gedvilaite, Erika, Yang, Julie L., Stephens, Dennis P., Dix, Jenna-Marie, DeGroat, Nicole, Nafa, Khedoudja, Syed, Aijazuddin, Li, Alan, Lebow, Emily S., Bowman, Anita S., Ferguson, Donna C., Liu, Ying, Mata, Douglas A., Sharma, Rohit, Yang, Soo-Ryum, Bale, Tejus, Benhamida, Jamal K., Chang, Jason C., Dogan, Snjezana, Hameed, Meera R., Hechtman, Jaclyn F., Moung, Christine, Ross, Dara S., Vakiani, Efsevia, Vanderbilt, Chad M., Yao, JinJuan, Razavi, Pedram, Smyth, Lillian M., Chandarlapaty, Sarat, Iyer, Gopa, Abida, Wassim, Harding, James J., Krantz, Benjamin, O’Reilly, Eileen, Yu, Helena A., Li, Bob T., Rudin, Charles M., Diaz, Luis, Solit, David B., Arcila, Maria E., Ladanyi, Marc, Loomis, Brian, Tsui, Dana, Berger, Michael F., Zehir, Ahmet, Benayed, Ryma
Published in Nature communications (18.06.2021)
Published in Nature communications (18.06.2021)
Get full text
Journal Article
Prospective Comprehensive Molecular Characterization of Lung Adenocarcinomas for Efficient Patient Matching to Approved and Emerging Therapies
Jordan, Emmet J., Kim, Hyunjae R., Arcila, Maria E., Barron, David, Chakravarty, Debyani, Gao, JianJiong, Chang, Matthew T., Ni, Andy, Kundra, Ritika, Jonsson, Philip, Jayakumaran, Gowtham, Gao, Sizhi Paul, Johnsen, Hannah C., Hanrahan, Aphrothiti J., Zehir, Ahmet, Rekhtman, Natasha, Ginsberg, Michelle S., Li, Bob T., Yu, Helena A., Paik, Paul K., Drilon, Alexander, Hellmann, Matthew D., Reales, Dalicia N., Benayed, Ryma, Rusch, Valerie W., Kris, Mark G., Chaft, Jamie E., Baselga, José, Taylor, Barry S., Schultz, Nikolaus, Rudin, Charles M., Hyman, David M., Berger, Michael F., Solit, David B., Ladanyi, Marc, Riely, Gregory J.
Published in Cancer discovery (01.06.2017)
Published in Cancer discovery (01.06.2017)
Get full text
Journal Article
A Performance Comparison of Commonly Used Assays to Detect RET Fusions
Yang, Soo-Ryum, Aypar, Umut, Rosen, Ezra Y., Mata, Douglas A., Benayed, Ryma, Mullaney, Kerry, Jayakumaran, Gowtham, Zhang, Yanming, Frosina, Denise, Drilon, Alexander, Ladanyi, Marc, Jungbluth, Achim A., Rekhtman, Natasha, Hechtman, Jaclyn F.
Published in Clinical cancer research (01.03.2021)
Published in Clinical cancer research (01.03.2021)
Get full text
Journal Article
Genetic hallmarks of recurrent/metastatic adenoid cystic carcinoma
Ho, Allen S., Ochoa, Angelica, Jayakumaran, Gowtham, Zehir, Ahmet, Valero Mayor, Cristina, Tepe, Justin, Makarov, Vladimir, Dalin, Martin G., He, Jie, Bailey, Mark, Montesion, Meagan, Ross, Jeffrey S., Miller, Vincent A., Chan, Lindsay, Ganly, Ian, Dogan, Snjezana, Katabi, Nora, Tsipouras, Petros, Ha, Patrick, Agrawal, Nishant, Solit, David B., Futreal, P. Andrew, El Naggar, Adel K., Reis-Filho, Jorge S., Weigelt, Britta, Ho, Alan L., Schultz, Nikolaus, Chan, Timothy A., Morris, Luc G.T.
Published in The Journal of clinical investigation (01.10.2019)
Published in The Journal of clinical investigation (01.10.2019)
Get full text
Journal Article
The Landscape of Somatic Genetic Alterations in Breast Cancers From ATM Germline Mutation Carriers
Weigelt, Britta, Bi, Rui, Kumar, Rahul, Blecua, Pedro, Mandelker, Diana L, Geyer, Felipe C, Pareja, Fresia, James, Paul A, Couch, Fergus J, Eccles, Diana M, Blows, Fiona, Pharoah, Paul, Li, Anqi, Selenica, Pier, Lim, Raymond S, Jayakumaran, Gowtham, Waddell, Nic, Shen, Ronglai, Norton, Larry, Wen, Hannah Y, Powell, Simon N, Riaz, Nadeem, Robson, Mark E, Reis-Filho, Jorge S, Chenevix-Trench, Georgia
Published in JNCI : Journal of the National Cancer Institute (01.09.2018)
Published in JNCI : Journal of the National Cancer Institute (01.09.2018)
Get full text
Journal Article
Adverse histology, homozygous loss of CDKN2A/B, and complex genomic alterations in locally advanced/metastatic renal mucinous tubular and spindle cell carcinoma
Yang, Chen, Cimera, Robert S., Aryeequaye, Ruth, Jayakumaran, Gowtham, Sarungbam, Judy, Al-Ahmadie, Hikmat A., Gopalan, Anuradha, Sirintrapun, S. Joseph, Fine, Samson W., Tickoo, Satish K., Epstein, Jonathan I., Reuter, Victor E., Zhang, Yanming, Chen, Ying-Bei
Published in Modern pathology (01.02.2021)
Published in Modern pathology (01.02.2021)
Get full text
Journal Article
A deep multiple instance learning framework improves microsatellite instability detection from tumor next generation sequencing
Ziegler, John, Hechtman, Jaclyn F., Rana, Satshil, Ptashkin, Ryan N., Jayakumaran, Gowtham, Middha, Sumit, Chavan, Shweta S., Vanderbilt, Chad, DeLair, Deborah, Casanova, Jacklyn, Shia, Jinru, DeGroat, Nicole, Benayed, Ryma, Ladanyi, Marc, Berger, Michael F., Fuchs, Thomas J., Brannon, A. Rose, Zehir, Ahmet
Published in Nature communications (02.01.2025)
Published in Nature communications (02.01.2025)
Get full text
Journal Article
Enhanced clinical assessment of hematologic malignancies through routine paired tumor and normal sequencing
Ptashkin, Ryan N., Ewalt, Mark D., Jayakumaran, Gowtham, Kiecka, Iwona, Bowman, Anita S., Yao, JinJuan, Casanova, Jacklyn, Lin, Yun-Te David, Petrova-Drus, Kseniya, Mohanty, Abhinita S., Bacares, Ruben, Benhamida, Jamal, Rana, Satshil, Razumova, Anna, Vanderbilt, Chad, Balakrishnan Rema, Anoop, Rijo, Ivelise, Son-Garcia, Julie, de Bruijn, Ino, Zhu, Menglei, Lachhander, Sean, Wang, Wei, Haque, Mohammad S., Seshan, Venkatraman E., Wang, Jiajing, Liu, Ying, Nafa, Khedoudja, Borsu, Laetitia, Zhang, Yanming, Aypar, Umut, Suehnholz, Sarah P., Chakravarty, Debyani, Park, Jae H., Abdel-Wahab, Omar, Mato, Anthony R., Xiao, Wenbin, Roshal, Mikhail, Yabe, Mariko, Batlevi, Connie Lee, Giralt, Sergio, Salles, Gilles, Rampal, Raajit, Tallman, Martin, Stein, Eytan M., Younes, Anas, Levine, Ross L., Perales, Miguel-Angel, van den Brink, Marcel R. M., Dogan, Ahmet, Ladanyi, Marc, Berger, Michael F., Brannon, A. Rose, Benayed, Ryma, Zehir, Ahmet, Arcila, Maria E.
Published in Nature communications (28.10.2023)
Published in Nature communications (28.10.2023)
Get full text
Journal Article
Tubulocystic renal cell carcinoma: a distinct clinicopathologic entity with a characteristic genomic profile
Sarungbam, Judy, Mehra, Rohit, Tomlins, Scott A., Smith, Steven C., Jayakumaran, Gowtham, Al-Ahmadie, Hikmat, Gopalan, Anuradha, Sirintrapun, Sahussapont J., Fine, Samson W., Zhang, Yanming, Amin, Mahul B., Reuter, Victor E., Chen, Ying-Bei, Tickoo, Satish K.
Published in Modern pathology (01.05.2019)
Published in Modern pathology (01.05.2019)
Get full text
Journal Article
Diagnostic yield and clinical relevance of expanded genetic testing for cancer patients
Ceyhan-Birsoy, Ozge, Jayakumaran, Gowtham, Kemel, Yelena, Misyura, Maksym, Aypar, Umut, Jairam, Sowmya, Yang, Ciyu, Li, Yirong, Mehta, Nikita, Maio, Anna, Arnold, Angela, Salo-Mullen, Erin, Sheehan, Margaret, Syed, Aijazuddin, Walsh, Michael, Carlo, Maria, Robson, Mark, Offit, Kenneth, Ladanyi, Marc, Reis-Filho, Jorge S., Stadler, Zsofia K., Zhang, Liying, Latham, Alicia, Zehir, Ahmet, Mandelker, Diana
Published in Genome medicine (15.08.2022)
Published in Genome medicine (15.08.2022)
Get full text
Journal Article
Mutant-RB1 circulating tumor DNA in the blood of unilateral retinoblastoma patients: What happens during enucleation surgery: A pilot study
Abramson, David H., Mandelker, Diana L., Brannon, A. Rose, Dunkel, Ira J., Benayed, Ryma, Berger, Michael F., Arcila, Maria E., Ladanyi, Marc, Friedman, Danielle Novetsky, Jayakumaran, Gowtham, Diosdado, Monica S., Robbins, Melissa A., Haggag-Lindgren, Dianna, Shukla, Neerav, Walsh, Michael F., Kothari, Prachi, Tsui, Dana W. Y., Francis, Jasmine H.
Published in PloS one (03.02.2023)
Published in PloS one (03.02.2023)
Get full text
Journal Article
Erratum: Mutational landscape of metastatic cancer revealed from prospective clinical sequencing of 10,000 patients
Zehir, Ahmet, Benayed, Ryma, Shah, Ronak H, Syed, Aijazuddin, Middha, Sumit, Kim, Hyunjae R, Srinivasan, Preethi, Gao, Jianjiong, Chakravarty, Debyani, Devlin, Sean M, Hellmann, Matthew D, Barron, David A, Schram, Alison M, Hameed, Meera, Dogan, Snjezana, Ross, Dara S, Hechtman, Jaclyn F, DeLair, Deborah F, Yao, JinJuan, Mandelker, Diana L, Cheng, Donavan T, Chandramohan, Raghu, Mohanty, Abhinita S, Ptashkin, Ryan N, Jayakumaran, Gowtham, Prasad, Meera, Syed, Mustafa H, Rema, Anoop Balakrishnan, Liu, Zhen Y, Nafa, Khedoudja, Borsu, Laetitia, Sadowska, Justyna, Casanova, Jacklyn, Bacares, Ruben, Kiecka, Iwona J, Razumova, Anna, Son, Julie B, Stewart, Lisa, Baldi, Tessara, Mullaney, Kerry A, Al-Ahmadie, Hikmat, Vakiani, Efsevia, Abeshouse, Adam A, Penson, Alexander V, Jonsson, Philip, Camacho, Niedzica, Chang, Matthew T, Won, Helen H, Gross, Benjamin E, Kundra, Ritika, Heins, Zachary J, Chen, Hsiao-Wei, Phillips, Sarah, Zhang, Hongxin, Wang, Jiaojiao, Ochoa, Angelica, Wills, Jonathan, Eubank, Michael, Thomas, Stacy B, Gardos, Stuart M, Reales, Dalicia N, Galle, Jesse, Durany, Robert, Cambria, Roy, Abida, Wassim, Cercek, Andrea, Feldman, Darren R, Gounder, Mrinal M, Hakimi, A Ari, Harding, James J, Iyer, Gopa, Janjigian, Yelena Y, Jordan, Emmet J, Kelly, Ciara M, Lowery, Maeve A, Morris, Luc G T, Omuro, Antonio M, Raj, Nitya, Razavi, Pedram, Shoushtari, Alexander N, Shukla, Neerav, Soumerai, Tara E, Varghese, Anna M, Yaeger, Rona, Coleman, Jonathan, Bochner, Bernard, Riely, Gregory J, Saltz, Leonard B, Scher, Howard I, Sabbatini, Paul J, Robson, Mark E, Klimstra, David S, Taylor, Barry S, Baselga, Jose, Schultz, Nikolaus, Hyman, David M, Arcila, Maria E, Solit, David B, Ladanyi, Marc, Berger, Michael F
Published in Nature medicine (01.08.2017)
Published in Nature medicine (01.08.2017)
Get full text
Journal Article
Prevalence and Preliminary Validation of Screening Criteria to Identify Carriers of Germline BAP1 Mutations
Zauderer, Marjorie G., Jayakumaran, Gowtham, DuBoff, Mariel, Zhang, Liying, Francis, Jasmine H., Abramson, David H., Cercek, Andrea, Nash, Garrett M., Shoushtari, Alexander, Chapman, Paul, D’Angelo, Sandra, Arnold, Angela G., Siegel, Beth, Fleischut, Megan Harlan, Ni, Andy, Rimner, Andreas, Rusch, Valerie W., Adusumilli, Prasad S., Travis, William, Sauter, Jennifer L., Zehir, Ahmet, Mandelker, Diana, Ladanyi, Marc, Robson, Mark
Published in Journal of thoracic oncology (01.11.2019)
Published in Journal of thoracic oncology (01.11.2019)
Get full text
Journal Article
Retrospective Evaluation of Somatic Alterations in Cell-Free DNA from Blood in Retinoblastoma
Abramson, David H., Mandelker, Diana, Francis, Jasmine H., Dunkel, Ira J., Brannon, A. Rose, Benayed, Ryma, Berger, Michael F., Arcila, Maria E., Ladanyi, Marc, Friedman, Danielle Novetsky, Jayakumaran, Gowtham, Diosdado, Monica S., Robbins, Melissa A., Haggag-Lindgren, Dianna, Shukla, Neerav, Walsh, Michael, Kothari, Prachi, Tsui, Dana W.Y.
Published in Ophthalmology science (Online) (01.03.2021)
Published in Ophthalmology science (Online) (01.03.2021)
Get full text
Journal Article