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Can we predict T cell specificity with digital biology and machine learning?
Hudson, Dan, Fernandes, Ricardo A., Basham, Mark, Ogg, Graham, Koohy, Hashem
Published in Nature reviews. Immunology (01.08.2023)
Published in Nature reviews. Immunology (01.08.2023)
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Journal Article
Autoimmunity-associated T cell receptors recognize HLA-B27-bound peptides
Yang, Xinbo, Garner, Lee I., Zvyagin, Ivan V., Paley, Michael A., Komech, Ekaterina A., Jude, Kevin M., Zhao, Xiang, Fernandes, Ricardo A., Hassman, Lynn M., Paley, Grace L., Savvides, Christina S., Brackenridge, Simon, Quastel, Max N., Chudakov, Dmitriy M., Bowness, Paul, Yokoyama, Wayne M., McMichael, Andrew J., Gillespie, Geraldine M., Garcia, K. Christopher
Published in Nature (London) (22.12.2022)
Published in Nature (London) (22.12.2022)
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Journal Article
RTN4/NoGo-receptor binding to BAI adhesion-GPCRs regulates neuronal development
Wang, Jie, Miao, Yi, Wicklein, Rebecca, Sun, Zijun, Wang, Jinzhao, Jude, Kevin M., Fernandes, Ricardo A., Merrill, Sean A., Wernig, Marius, Garcia, K. Christopher, Südhof, Thomas C.
Published in Cell (24.11.2021)
Published in Cell (24.11.2021)
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Journal Article
A Human IgSF Cell-Surface Interactome Reveals a Complex Network of Protein-Protein Interactions
Wojtowicz, Woj M., Vielmetter, Jost, Fernandes, Ricardo A., Siepe, Dirk H., Eastman, Catharine L., Chisholm, Gregory B., Cox, Sarah, Klock, Heath, Anderson, Paul W., Rue, Sarah M., Miller, Jessica J., Glaser, Scott M., Bragstad, Melisa L., Vance, Julie, Lam, Annie W., Lesley, Scott A., Zinn, Kai, Garcia, K. Christopher
Published in Cell (20.08.2020)
Published in Cell (20.08.2020)
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Journal Article
Proximity proteomics reveals UCH-L1 as an essential regulator of NLRP3-mediated IL-1β production in human macrophages and microglia
Liang, Zhu, Damianou, Andreas, Vendrell, Iolanda, Jenkins, Edward, Lassen, Frederik H., Washer, Sam J., Grigoriou, Athina, Liu, Guihai, Yi, Gangshun, Lou, Hantao, Cao, Fangyuan, Zheng, Xiaonan, Fernandes, Ricardo A., Dong, Tao, Tate, Edward W., Di Daniel, Elena, Kessler, Benedikt M.
Published in Cell reports (Cambridge) (28.05.2024)
Published in Cell reports (Cambridge) (28.05.2024)
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Journal Article
A robust deep learning workflow to predict CD8 + T-cell epitopes
Lee, Chloe H., Huh, Jaesung, Buckley, Paul R., Jang, Myeongjun, Pinho, Mariana Pereira, Fernandes, Ricardo A., Antanaviciute, Agne, Simmons, Alison, Koohy, Hashem
Published in Genome medicine (13.09.2023)
Published in Genome medicine (13.09.2023)
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Journal Article
Remarkably low affinity of CD4/peptide-major histocompatibility complex class II protein interactions
Jönsson, Peter, Southcombe, Jennifer H., Santos, Ana Mafalda, Huo, Jiandong, Fernandes, Ricardo A., McColl, James, Lever, Melissa, Evans, Edward J., Hudson, Alexander, Chang, Veronica T., Hanke, Tomáš, Godkin, Andrew, Dunne, Paul D., Horrocks, Mathew H., Palayret, Matthieu, Screaton, Gavin R., Petersen, Jan, Rossjohn, Jamie, Fugger, Lars, Dushek, Omer, Xu, Xiao-Ning, Davis, Simon J., Klenerman, David
Published in Proceedings of the National Academy of Sciences - PNAS (17.05.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (17.05.2016)
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Journal Article
Cytoskeletal actin dynamics shape a ramifying actin network underpinning immunological synapse formation
Fritzsche, Marco, Fernandes, Ricardo A., Chang, Veronica T., Colin-York, Huw, Clausen, Mathias P., Felce, James H., Galiani, Silvia, Erlenkämper, Christoph, Santos, Ana M., Heddleston, John M., Pedroza-Pacheco, Isabela, Waithe, Dominic, de la Serna, Jorge Bernardino, Lagerholm, B. Christoffer, Liu, Tsung-li, Chew, Teng-Leong, Betzig, Eric, Davis, Simon J., Eggeling, Christian
Published in Science advances (01.06.2017)
Published in Science advances (01.06.2017)
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Journal Article
Discovery of surrogate agonists for visceral fat Treg cells that modulate metabolic indices in vivo
Fernandes, Ricardo A, Li, Chaoran, Wang, Gang, Yang, Xinbo, Savvides, Christina S, Glassman, Caleb R, Dong, Shen, Luxenberg, Eric, Sibener, Leah V, Birnbaum, Michael E, Benoist, Christophe, Mathis, Diane, Garcia, K Christopher
Published in eLife (10.08.2020)
Published in eLife (10.08.2020)
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Journal Article
Diabetes and peripheral neuropathy are related to higher passive torque and stiffness of the knee and ankle joints
Santune, Afonso H. A., Salvini, Tania F., Sacco, Isabel C. N., Aranha, Gabriel D. A., Fernandes, Ricardo A. S., Pott-Júnior, Henrique, Perea, Julya P. M., Serrão, Paula R. M. S., Leal, Ângela M. O., Araújo, Vanessa L., Ferreira, Jean P.
Published in Kinesiology (Zagreb, Croatia) (01.06.2022)
Published in Kinesiology (Zagreb, Croatia) (01.06.2022)
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Journal Article
Paper
Biopsychosocial Aspects in Individuals with Acute and Chronic Rotator Cuff Related Shoulder Pain: Classification Based on a Decision Tree Analysis
Haik, Melina N, Alburquerque-Sendín, Francisco, Fernandes, Ricardo A S, Kamonseki, Danilo H, Almeida, Lucas A, Liebano, Richard E, Camargo, Paula R
Published in Diagnostics (Basel) (10.11.2020)
Published in Diagnostics (Basel) (10.11.2020)
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Journal Article