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Spatio-temporal mRNA tracking in the early zebrafish embryo
Holler, Karoline, Neuschulz, Anika, Drewe-Boß, Philipp, Mintcheva, Janita, Spanjaard, Bastiaan, Arsiè, Roberto, Ohler, Uwe, Landthaler, Markus, Junker, Jan Philipp
Published in Nature communications (07.06.2021)
Published in Nature communications (07.06.2021)
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Journal Article
DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation
Dubin, Manu J, Zhang, Pei, Meng, Dazhe, Remigereau, Marie-Stanislas, Osborne, Edward J, Paolo Casale, Francesco, Drewe, Philipp, Kahles, André, Jean, Geraldine, Vilhjálmsson, Bjarni, Jagoda, Joanna, Irez, Selen, Voronin, Viktor, Song, Qiang, Long, Quan, Rätsch, Gunnar, Stegle, Oliver, Clark, Richard M, Nordborg, Magnus
Published in eLife (05.05.2015)
Published in eLife (05.05.2015)
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Journal Article
Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity
Weirauch, Matthew T., Yang, Ally, Albu, Mihai, Cote, Atina G., Montenegro-Montero, Alejandro, Drewe, Philipp, Najafabadi, Hamed S., Lambert, Samuel A., Mann, Ishminder, Cook, Kate, Zheng, Hong, Goity, Alejandra, van Bakel, Harm, Lozano, Jean-Claude, Galli, Mary, Lewsey, Mathew G., Huang, Eryong, Mukherjee, Tuhin, Chen, Xiaoting, Reece-Hoyes, John S., Govindarajan, Sridhar, Shaulsky, Gad, Walhout, Albertha J.M., Bouget, François-Yves, Ratsch, Gunnar, Larrondo, Luis F., Ecker, Joseph R., Hughes, Timothy R.
Published in Cell (11.09.2014)
Published in Cell (11.09.2014)
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Journal Article
RiboDiff: detecting changes of mRNA translation efficiency from ribosome footprints
Zhong, Yi, Karaletsos, Theofanis, Drewe, Philipp, Sreedharan, Vipin T, Kuo, David, Singh, Kamini, Wendel, Hans-Guido, Rätsch, Gunnar
Published in Bioinformatics (Oxford, England) (01.01.2017)
Published in Bioinformatics (Oxford, England) (01.01.2017)
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Journal Article
Nonsense-Mediated Decay of Alternative Precursor mRNA Splicing Variants Is a Major Determinant of the Arabidopsis Steady State Transcriptome
Drechsel, Gabriele, Kahles, André, Kesarwani, Anil K., Stauffer, Eva, Behr, Jonas, Drewe, Philipp, Rätsch, Gunnar, Wachter, Andreas
Published in The Plant cell (01.10.2013)
Published in The Plant cell (01.10.2013)
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Journal Article
Alternative Splicing Substantially Diversifies the Transcriptome during Early Photomorphogenesis and Correlates with the Energy Availability in Arabidopsis
Hartmann, Lisa, Drewe-Boß, Philipp, Wießner, Theresa, Wagner, Gabriele, Geue, Sascha, Lee, Hsin-Chieh, Obermüller, Dominik M., Kahles, André, Behr, Jonas, Sinz, Fabian H., Rätsch, Gunnar, Wachter, Andreas
Published in The Plant cell (01.11.2016)
Published in The Plant cell (01.11.2016)
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Journal Article
Deep learning for prediction of population health costs
Drewe-Boss, Philipp, Enders, Dirk, Walker, Jochen, Ohler, Uwe
Published in BMC medical informatics and decision making (03.02.2022)
Published in BMC medical informatics and decision making (03.02.2022)
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Journal Article
SLM2 Is A Novel Cardiac Splicing Factor Involved in Heart Failure due to Dilated Cardiomyopathy
Boeckel, Jes-Niels, Möbius-Winkler, Maximilian, Müller, Marion, Rebs, Sabine, Eger, Nicole, Schoppe, Laura, Tappu, Rewati, Kokot, Karoline E., Kneuer, Jasmin M., Gaul, Susanne, Bordalo, Diana M., Lai, Alan, Haas, Jan, Ghanbari, Mahsa, Drewe-Boss, Philipp, Liss, Martin, Katus, Hugo A., Ohler, Uwe, Gotthardt, Michael, Laufs, Ulrich, Streckfuss-Bömeke, Katrin, Meder, Benjamin
Published in Genomics, Proteomics & Bioinformatics (01.02.2022)
Published in Genomics, Proteomics & Bioinformatics (01.02.2022)
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Journal Article
Multiple insert size paired-end sequencing for deconvolution of complex transcriptomes
Smith, Lisa M., Hartmann, Lisa, Drewe, Philipp, Bohnert, Regina, Kahles, André, Lanz, Christa, Rätsch, Gunnar
Published in RNA biology (01.05.2012)
Published in RNA biology (01.05.2012)
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Journal Article
Statistical Tests for Detecting Differential RNA-Transcript Expression from Read Counts
Stegle, Oliver, Drewe, Philipp, Bohnert, Regina, Borgwardt, Karsten, Rätsch, Gunnar
Published in Nature precedings (11.05.2010)
Published in Nature precedings (11.05.2010)
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Journal Article
RNA G-quadruplexes cause eIF4A-dependent oncogene translation in cancer
Wolfe, Andrew L., Singh, Kamini, Zhong, Yi, Drewe, Philipp, Rajasekhar, Vinagolu K., Sanghvi, Viraj R., Mavrakis, Konstantinos J., Jiang, Man, Roderick, Justine E., Van der Meulen, Joni, Schatz, Jonathan H., Rodrigo, Christina M., Zhao, Chunying, Rondou, Pieter, de Stanchina, Elisa, Teruya-Feldstein, Julie, Kelliher, Michelle A., Speleman, Frank, Porco, John A., Pelletier, Jerry, Rätsch, Gunnar, Wendel, Hans-Guido
Published in Nature (London) (04.09.2014)
Published in Nature (London) (04.09.2014)
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Journal Article
Multiple reference genomes and transcriptomes for Arabidopsis thaliana
Gan, Xiangchao, Stegle, Oliver, Behr, Jonas, Steffen, Joshua G., Drewe, Philipp, Hildebrand, Katie L., Lyngsoe, Rune, Schultheiss, Sebastian J., Osborne, Edward J., Sreedharan, Vipin T., Kahles, André, Bohnert, Regina, Jean, Géraldine, Derwent, Paul, Kersey, Paul, Belfield, Eric J., Harberd, Nicholas P., Kemen, Eric, Toomajian, Christopher, Kover, Paula X., Clark, Richard M., Rätsch, Gunnar, Mott, Richard
Published in Nature (London) (22.09.2011)
Published in Nature (London) (22.09.2011)
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Journal Article
Determinants of robustness in spindle assembly checkpoint signalling
Heinrich, Stephanie, Geissen, Eva-Maria, Kamenz, Julia, Trautmann, Susanne, Widmer, Christian, Drewe, Philipp, Knop, Michael, Radde, Nicole, Hasenauer, Jan, Hauf, Silke
Published in Nature cell biology (01.11.2013)
Published in Nature cell biology (01.11.2013)
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Journal Article
MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples
Behr, Jonas, Kahles, André, Zhong, Yi, Sreedharan, Vipin T., Drewe, Philipp, Rätsch, Gunnar
Published in Bioinformatics (15.10.2013)
Published in Bioinformatics (15.10.2013)
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Journal Article
Accurate detection of differential RNA processing
Drewe, Philipp, Stegle, Oliver, Hartmann, Lisa, Kahles, André, Bohnert, Regina, Wachter, Andreas, Borgwardt, Karsten, Rätsch, Gunnar
Published in Nucleic acids research (01.05.2013)
Published in Nucleic acids research (01.05.2013)
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Journal Article
Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis
Sreedharan, Vipin T., Schultheiss, Sebastian J., Jean, Géraldine, Kahles, André, Bohnert, Regina, Drewe, Philipp, Mudrakarta, Pramod, Görnitz, Nico, Zeller, Georg, Rätsch, Gunnar
Published in Bioinformatics (01.05.2014)
Published in Bioinformatics (01.05.2014)
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Journal Article
Oqtans: a multifunctional workbench for RNA-seq data analysis
Sreedharan, Vipin T, Schultheiss, Sebastian J, Jean, Géraldine, Kahles, André, Bohnert, Regina, Drewe, Philipp, Mudrakarta, Pramod, Görnitz, Nico, Zeller, Georg, Rätsch, Gunnar
Published in BMC bioinformatics (11.02.2014)
Published in BMC bioinformatics (11.02.2014)
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Journal Article