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Protocol for metagenomic virus detection in clinical specimens
Kohl, Claudia, Brinkmann, Annika, Dabrowski, Piotr W, Radonić, Aleksandar, Nitsche, Andreas, Kurth, Andreas
Published in Emerging infectious diseases (01.01.2015)
Published in Emerging infectious diseases (01.01.2015)
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Journal Article
Investigating the zoonotic origin of the West African Ebola epidemic
Marí Saéz, Almudena, Weiss, Sabrina, Nowak, Kathrin, Lapeyre, Vincent, Zimmermann, Fee, Düx, Ariane, Kühl, Hjalmar S, Kaba, Moussa, Regnaut, Sebastien, Merkel, Kevin, Sachse, Andreas, Thiesen, Ulla, Villányi, Lili, Boesch, Christophe, Dabrowski, Piotr W, Radonić, Aleksandar, Nitsche, Andreas, Leendertz, Siv Aina J, Petterson, Stefan, Becker, Stephan, Krähling, Verena, Couacy‐Hymann, Emmanuel, Akoua‐Koffi, Chantal, Weber, Natalie, Schaade, Lars, Fahr, Jakob, Borchert, Matthias, Gogarten, Jan F, Calvignac‐Spencer, Sébastien, Leendertz, Fabian H
Published in EMBO molecular medicine (01.01.2015)
Published in EMBO molecular medicine (01.01.2015)
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Journal Article
seq-seq-pan: building a computational pan-genome data structure on whole genome alignment
Jandrasits, Christine, Dabrowski, Piotr W., Fuchs, Stephan, Renard, Bernhard Y.
Published in BMC genomics (15.01.2018)
Published in BMC genomics (15.01.2018)
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Journal Article
Berlin Squirrelpox Virus, a New Poxvirus in Red Squirrels, Berlin, Germany
Wibbelt, Gudrun, Tausch, Simon H., Dabrowski, Piotr W., Kershaw, Olivia, Nitsche, Andreas, Schrick, Livia
Published in Emerging infectious diseases (01.10.2017)
Published in Emerging infectious diseases (01.10.2017)
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Journal Article
Complete Genome Sequence of the Porcine Isolate Enterococcus faecalis D32
Zischka, Melanie, Kuenne, Carsten, Blom, Jochen, Dabrowski, Piotr W, Linke, Burkhard, Hain, Torsten, Nitsche, Andreas, Goesmann, Alexander, Larsen, Jesper, Jensen, Lars B, Witte, Wolfgang, Werner, Guido
Published in Journal of Bacteriology (01.10.2012)
Published in Journal of Bacteriology (01.10.2012)
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Journal Article
Rapid detection of anti-Vaccinia virus neutralizing antibodies
Kramski, Marit, Drozd, Anna, Lichtfuss, Gregor F, Dabrowski, Piotr W, Ellerbrok, Heinz
Published in Virology journal (25.03.2011)
Published in Virology journal (25.03.2011)
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Journal Article
PAIPline: pathogen identification in metagenomic and clinical next generation sequencing samples
Andrusch, Andreas, Dabrowski, Piotr W, Klenner, Jeanette, Tausch, Simon H, Kohl, Claudia, Osman, Abdalla A, Renard, Bernhard Y, Nitsche, Andreas
Published in Bioinformatics (01.09.2018)
Published in Bioinformatics (01.09.2018)
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Journal Article
HiLive: real-time mapping of illumina reads while sequencing
Lindner, Martin S, Strauch, Benjamin, Schulze, Jakob M, Tausch, Simon H, Dabrowski, Piotr W, Nitsche, Andreas, Renard, Bernhard Y
Published in Bioinformatics (Oxford, England) (15.03.2017)
Published in Bioinformatics (Oxford, England) (15.03.2017)
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Journal Article
PriLive: privacy-preserving real-time filtering for next-generation sequencing
Loka, Tobias P, Tausch, Simon H, Dabrowski, Piotr W, Radonić, Aleksandar, Nitsche, Andreas, Renard, Bernhard Y
Published in Bioinformatics (15.07.2018)
Published in Bioinformatics (15.07.2018)
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Journal Article
Infection of human airway epithelial cells by different subtypes of Dobrava-Belgrade virus reveals gene expression patterns corresponding to their virulence potential
Witkowski, Peter T., Bourquain, Daniel, Bankov, Katrin, Auste, Brita, Dabrowski, Piotr W., Nitsche, Andreas, Krüger, Detlev H., Schaade, Lars
Published in Virology (New York, N.Y.) (01.06.2016)
Published in Virology (New York, N.Y.) (01.06.2016)
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Journal Article
Identification and characterization of episomal forms of integrative genomic islands in the genus Francisella
Rydzewski, Kerstin, Tlapák, Hana, Niehaus, Indra P., Dabrowski, Piotr W., Grunow, Roland, Heuner, Klaus
Published in International journal of medical microbiology (01.12.2015)
Published in International journal of medical microbiology (01.12.2015)
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Journal Article
Comparing Viral Metagenomic Extraction Methods
Klenner, Jeanette, Kohl, Claudia, Dabrowski, Piotr Wojtek, Nitsche, Andreas
Published in Current Issues in Molecular Biology (2017)
Published in Current Issues in Molecular Biology (2017)
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Journal Article
Protocol for Metagenomic Virus Detection in Clinical Specimens1
Kohl, Claudia, Brinkmann, Annika, Dabrowski, Piotr W., Radonić, Aleksandar, Nitsche, Andreas, Kurth, Andreas
Published in Emerging infectious diseases (01.01.2015)
Published in Emerging infectious diseases (01.01.2015)
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Journal Article
Fatal monkeypox in wild-living sooty mangabey, Côte d'Ivoire, 2012
Radonić, Aleksandar, Metzger, Sonja, Dabrowski, Piotr Wojtek, Couacy-Hymann, Emmanuel, Schuenadel, Livia, Kurth, Andreas, Mätz-Rensing, Kerstin, Boesch, Christophe, Leendertz, Fabian H, Nitsche, Andreas
Published in Emerging infectious diseases (01.06.2014)
Published in Emerging infectious diseases (01.06.2014)
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Journal Article
An Environment for Sustainable Research Software in Germany and Beyond: Current State, Open Challenges, and Call for Action
Hartwig Anzt, Bach, Felix, Druskat, Stephan, Löffler, Frank, Loewe, Axel, Renard, Bernhard Y, Seemann, Gunnar, Struck, Alexander, Achhammer, Elke, Aggarwal, Piush, Appel, Franziska, Bader, Michael, Brusch, Lutz, Busse, Christian, Chourdakis, Gerasimos, Dabrowski, Piotr W, Ebert, Peter, Flemisch, Bernd, Friedl, Sven, Fritzsch, Bernadette, Funk, Maximilian D, Gast, Volker, Goth, Florian, Grad, Jean-Noël, Hermann, Sibylle, Hohmann, Florian, Janosch, Stephan, Kutra, Dominik, Linxweiler, Jan, Muth, Thilo, Peters-Kottig, Wolfgang, Rack, Fabian, Raters, Fabian H C, Rave, Stephan, Reina, Guido, Reißig, Malte, Ropinski, Timo, Schaarschmidt, Joerg, Seibold, Heidi, Thiele, Jan P, Uekerman, Benjamin, Unger, Stefan, Weeber, Rudolf
Published in arXiv.org (05.05.2020)
Published in arXiv.org (05.05.2020)
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Paper
Journal Article
PathoLive - Real-time pathogen identification from metagenomic Illumina datasets
Tausch, Simon H, Loka, Tobias P, Schulze, Jakob M, Andrusch, Andreas, Klenner, Jeanette, Piotr Wojciech Dabrowski, Lindner, Martin S, Nitsche, Andreas, Renard, Bernhard Y
Published in bioRxiv (14.04.2020)
Published in bioRxiv (14.04.2020)
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Paper
Critical Assessment of Metagenome Interpretation - the second round of challenges
Meyer, Fernando, Fritz, Adrian, Zhi-Luo Deng, Koslicki, David, Gurevich, Alexey, Robertson, Gary, Zhu, Jie, Jia, Huijue, Kola, Axel, Limasset, Antoine, Kolmogorov, Mikhail, Egan, Rob, Rosen, Gail L, Alexandru Cristian, Zhao, Zhengqiao, Gray, Melissa A, Nissen, Jakob, Zeller, Georg, Paoli, Lucas, Ruscheweyh, Hans-Joachim, Milanese, Alessio, Sunagawa, Shinichi, Alser, Mohammed, Shi, Lizhen, Chen, Bo, Wang, Zhengyang, Wang, Ziye, Huang, Pingqin, You, Ronghui, Sun, Fengzhu, Zhu, Shanfeng, Bertrand, Denis, Tong, Chengxuan, Li, Chenhao, Nagarajan, Niranjan, Renard, Bernhard, Malcher-Miranda, Fabio, Piro, Vitor C, Chikhi, Rayan, Vicedomini, Riccardo, Wang, Zhong, Thomas, Ashleigh, Tremblay, Julien, Dabrowski, Piotr W, Nurk, Sergey, Jorgensen, Tue S, Willassen, Nils P, Klemetsen, Terje, Robertsen, Espen M, Georganas, Evangelos, Yelick, Katherine, C Titus Brown, Lemaitre, Claire, Peterlongo, Pierre, Marchet, Camille, Marijon, Pierre, Irber, Luiz, Brito, Jaqueline J, Lapierre, Nathan, Eskin, Eleazar, Rasmussen, Simon, Sorensen, Soren J, Hansen, Lars H, Trajkovski, Mirko, Kieser, Silas D, Mende, Daniel R, Serghei Mangul, Sarwal, Varuni, Beghini, Francesco, Segata, Nicola, Warren, Andrew, Porter, Jacob S, Rees, Evan R, Kwan, Jason, Clausen, Philip Tlc, Buchmann, Jan, Reinert, Knut, Seiler, Enrico, Korobeynikov, Anton, Antipov, Dmitry, Meleshko, Dmitry, Aydin Buluc, Hofmeyr, Steven, Oliker, Leonid, Goltsman, Eugene, Gherman Uritskiy, Radutoiu, Simona, Gastmeier, Petra, Maechler, Friederike, Khaledi, Ariane, Haussler, Susanne, Smit, Nathiana, Strowig, Till, Garrido-Oter, Ruben, Fantin Mesny, Hacquard, Stephane, Schulze-Lefert, Paul, Bremges, Andreas, Sczyrba, Alexander, Mchardy, Alice C
Published in bioRxiv (12.07.2021)
Published in bioRxiv (12.07.2021)
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Paper