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Data-driven recombination detection in viral genomes
Alfonsi, Tommaso, Bernasconi, Anna, Chiara, Matteo, Ceri, Stefano
Published in Nature communications (17.04.2024)
Published in Nature communications (17.04.2024)
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Journal Article
Role of the long non-coding RNA PVT1 in the dysregulation of the ceRNA-ceRNA network in human breast cancer
Conte, Federica, Fiscon, Giulia, Chiara, Matteo, Colombo, Teresa, Farina, Lorenzo, Paci, Paola
Published in PloS one (10.02.2017)
Published in PloS one (10.02.2017)
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Journal Article
Ploidy influences the functional attributes of de novo lager yeast hybrids
Krogerus, Kristoffer, Arvas, Mikko, De Chiara, Matteo, Magalhães, Frederico, Mattinen, Laura, Oja, Merja, Vidgren, Virve, Yue, Jia-Xing, Liti, Gianni, Gibson, Brian
Published in Applied microbiology and biotechnology (01.08.2016)
Published in Applied microbiology and biotechnology (01.08.2016)
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Journal Article
Mapping Cell Identity from scRNA-seq: A primer on computational methods
Traversa, Daniele, Chiara, Matteo
Published in Computational and structural biotechnology journal (01.01.2025)
Published in Computational and structural biotechnology journal (01.01.2025)
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Journal Article
Complete vertebrate mitogenomes reveal widespread repeats and gene duplications
Formenti, Giulio, Rhie, Arang, Balacco, Jennifer, Haase, Bettina, Mountcastle, Jacquelyn, Fedrigo, Olivier, Brown, Samara, Capodiferro, Marco Rosario, Al-Ajli, Farooq O., Ambrosini, Roberto, Houde, Peter, Koren, Sergey, Oliver, Karen, Smith, Michelle, Skelton, Jason, Betteridge, Emma, Dolucan, Jale, Corton, Craig, Bista, Iliana, Torrance, James, Tracey, Alan, Wood, Jonathan, Uliano-Silva, Marcela, Howe, Kerstin, McCarthy, Shane, Winkler, Sylke, Kwak, Woori, Korlach, Jonas, Fungtammasan, Arkarachai, Fordham, Daniel, Costa, Vania, Mayes, Simon, Chiara, Matteo, Horner, David S., Myers, Eugene, Durbin, Richard, Achilli, Alessandro, Braun, Edward L., Phillippy, Adam M., Jarvis, Erich D.
Published in Genome Biology (29.04.2021)
Published in Genome Biology (29.04.2021)
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Journal Article
BPC transcription factors and a Polycomb Group protein confine the expression of the ovule identity gene SEEDSTICK in Arabidopsis
Petrella, Rosanna, Caselli, Francesca, Roig‐Villanova, Irma, Vignati, Valentina, Chiara, Matteo, Ezquer, Ignacio, Tadini, Luca, Kater, Martin M., Gregis, Veronica
Published in The Plant journal : for cell and molecular biology (01.05.2020)
Published in The Plant journal : for cell and molecular biology (01.05.2020)
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Journal Article
Massive transcriptome sequencing of human spinal cord tissues provides new insights into motor neuron degeneration in ALS
D’Erchia, Anna Maria, Gallo, Angela, Manzari, Caterina, Raho, Susanna, Horner, David S., Chiara, Matteo, Valletti, Alessio, Aiello, Italia, Mastropasqua, Francesca, Ciaccia, Loredana, Locatelli, Franco, Pisani, Francesco, Nicchia, Grazia Paola, Svelto, Maria, Pesole, Graziano, Picardi, Ernesto
Published in Scientific reports (30.08.2017)
Published in Scientific reports (30.08.2017)
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Journal Article
ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community
Castrignanò, Tiziana, Gioiosa, Silvia, Flati, Tiziano, Cestari, Mirko, Picardi, Ernesto, Chiara, Matteo, Fratelli, Maddalena, Amente, Stefano, Cirilli, Marco, Tangaro, Marco Antonio, Chillemi, Giovanni, Pesole, Graziano, Zambelli, Federico
Published in BMC bioinformatics (21.08.2020)
Published in BMC bioinformatics (21.08.2020)
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Journal Article
Aborting meiosis allows recombination in sterile diploid yeast hybrids
Mozzachiodi, Simone, Tattini, Lorenzo, Llored, Agnes, Irizar, Agurtzane, Škofljanc, Neža, D’Angiolo, Melania, De Chiara, Matteo, Barré, Benjamin P., Yue, Jia-Xing, Lutazi, Angela, Loeillet, Sophie, Laureau, Raphaelle, Marsit, Souhir, Stenberg, Simon, Albaud, Benoit, Persson, Karl, Legras, Jean-Luc, Dequin, Sylvie, Warringer, Jonas, Nicolas, Alain, Liti, Gianni
Published in Nature communications (12.11.2021)
Published in Nature communications (12.11.2021)
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Journal Article
Large-scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing
Picardi, Ernesto, Horner, David S, Chiara, Matteo, Schiavon, Riccardo, Valle, Giorgio, Pesole, Graziano
Published in Nucleic acids research (01.08.2010)
Published in Nucleic acids research (01.08.2010)
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Journal Article
The pancancer overexpressed NFYC Antisense 1 controls cell cycle mitotic progression through in cis and in trans modes of action
Pandini, Cecilia, Pagani, Giulia, Tassinari, Martina, Vitale, Emanuele, Bezzecchi, Eugenia, Saadeldin, Mona Kamal, Doldi, Valentina, Giannuzzi, Giuliana, Mantovani, Roberto, Chiara, Matteo, Ciarrocchi, Alessia, Gandellini, Paolo
Published in Cell death & disease (11.03.2024)
Published in Cell death & disease (11.03.2024)
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Journal Article
Deconvolution of intergenic polymorphisms determining high expression of Factor H binding protein in meningococcus and their association with invasive disease
Spinsanti, Marco, Brignoli, Tarcisio, Bodini, Margherita, Fontana, Lucia Eleonora, De Chiara, Matteo, Biolchi, Alessia, Muzzi, Alessandro, Scarlato, Vincenzo, Delany, Isabel
Published in PLoS pathogens (01.03.2021)
Published in PLoS pathogens (01.03.2021)
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Journal Article
Targeted next-generation sequencing detects novel gene–phenotype associations and expands the mutational spectrum in cardiomyopathies
Forleo, Cinzia, D’Erchia, Anna Maria, Sorrentino, Sandro, Manzari, Caterina, Chiara, Matteo, Iacoviello, Massimo, Guaricci, Andrea Igoren, De Santis, Delia, Musci, Rita Leonarda, La Spada, Antonino, Marangelli, Vito, Pesole, Graziano, Favale, Stefano
Published in PloS one (27.07.2017)
Published in PloS one (27.07.2017)
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Journal Article
MADS-Box and bHLH Transcription Factors Coordinate Transmitting Tract Development in Arabidopsis thaliana
Di Marzo, Maurizio, Roig-Villanova, Irma, Zanchetti, Eva, Caselli, Francesca, Gregis, Veronica, Bardetti, Paola, Chiara, Matteo, Guazzotti, Andrea, Caporali, Elisabetta, Mendes, Marta Adelina, Colombo, Lucia, Kater, Martin M.
Published in Frontiers in plant science (06.05.2020)
Published in Frontiers in plant science (06.05.2020)
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Journal Article
CoVaCS: a consensus variant calling system
Chiara, Matteo, Gioiosa, Silvia, Chillemi, Giovanni, D’Antonio, Mattia, Flati, Tiziano, Picardi, Ernesto, Zambelli, Federico, Horner, David Stephen, Pesole, Graziano, Castrignanò, Tiziana
Published in BMC genomics (05.02.2018)
Published in BMC genomics (05.02.2018)
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Journal Article
Genome Sequencing and Comparative Analysis of Three Hanseniaspora uvarum Indigenous Wine Strains Reveal Remarkable Biotechnological Potential
Guaragnella, Nicoletta, Chiara, Matteo, Capece, Angela, Romano, Patrizia, Pietrafesa, Rocchina, Siesto, Gabriella, Manzari, Caterina, Pesole, Graziano
Published in Frontiers in microbiology (21.01.2020)
Published in Frontiers in microbiology (21.01.2020)
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Journal Article
Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service
Tangaro, Marco Antonio, Mandreoli, Pietro, Chiara, Matteo, Donvito, Giacinto, Antonacci, Marica, Parisi, Antonio, Bianco, Angelica, Romano, Angelo, Bianchi, Daniela Manila, Cangelosi, Davide, Uva, Paolo, Molineris, Ivan, Nosi, Vladimir, Calogero, Raffaele A., Alessandri, Luca, Pedrini, Elena, Mordenti, Marina, Bonetti, Emanuele, Sangiorgi, Luca, Pesole, Graziano, Zambelli, Federico
Published in BMC bioinformatics (08.11.2021)
Published in BMC bioinformatics (08.11.2021)
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Journal Article