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Dynamic allocation of orthogonal ribosomes facilitates uncoupling of co-expressed genes
Darlington, Alexander P. S., Kim, Juhyun, Jiménez, José I., Bates, Declan G.
Published in Nature communications (15.02.2018)
Published in Nature communications (15.02.2018)
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Journal Article
A simplified modelling framework facilitates more complex representations of plant circadian clocks
Foo, Mathias, Bates, Declan G., Akman, Ozgur E.
Published in PLoS computational biology (01.03.2020)
Published in PLoS computational biology (01.03.2020)
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Journal Article
Airway pressures generated by high flow nasal cannula in patients with acute hypoxemic respiratory failure: a computational study
Shamohammadi, Hossein, Weaver, Liam, Saffaran, Sina, Tonelli, Roberto, Laviola, Marianna, Laffey, John G., Camporota, Luigi, Scott, Timothy E., Hardman, Jonathan G., Clini, Enrico, Bates, Declan G.
Published in Respiratory research (08.01.2025)
Published in Respiratory research (08.01.2025)
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Journal Article
High risk of patient self-inflicted lung injury in COVID-19 with frequently encountered spontaneous breathing patterns: a computational modelling study
Weaver, Liam, Das, Anup, Saffaran, Sina, Yehya, Nadir, Scott, Timothy E., Chikhani, Marc, Laffey, John G., Hardman, Jonathan G., Camporota, Luigi, Bates, Declan G.
Published in Annals of intensive care (13.07.2021)
Published in Annals of intensive care (13.07.2021)
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Journal Article
Ultrasensitive Negative Feedback Control: A Natural Approach for the Design of Synthetic Controllers
Montefusco, Francesco, Akman, Ozgur E., Soyer, Orkun S., Bates, Declan G.
Published in PloS one (18.08.2016)
Published in PloS one (18.08.2016)
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Journal Article
Nonlinear Dynamics in Gene Regulation Promote Robustness and Evolvability of Gene Expression Levels
Steinacher, Arno, Bates, Declan G., Akman, Ozgur E., Soyer, Orkun S.
Published in PloS one (15.04.2016)
Published in PloS one (15.04.2016)
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Journal Article
Validation of at-the-bedside formulae for estimating ventilator driving pressure during airway pressure release ventilation using computer simulation
Mistry, Sonal, Das, Anup, Saffaran, Sina, Yehya, Nadir, Scott, Timothy E., Chikhani, Marc, Laffey, John G., Hardman, Jonathan G., Camporota, Luigi, Bates, Declan G.
Published in Respiratory research (26.04.2022)
Published in Respiratory research (26.04.2022)
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Journal Article
Digital twins suggest a mechanistic basis for differing responses to increased flow rates during high-flow nasal cannula therapy
Shamohammadi, Hossein, Saffaran, Sina, Tonelli, Roberto, Chiavieri, Valentina, Grasselli, Giacomo, Clini, Enrico, Mauri, Tommaso, Bates, Declan G.
Published in Intensive care medicine experimental (26.06.2025)
Published in Intensive care medicine experimental (26.06.2025)
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Journal Article
A mechanistic model of the BLADE platform predicts performance characteristics of 256 different synthetic DNA recombination circuits
Bowyer, Jack E., Ding, Chloe, Weinberg, Benjamin H., Wong, Wilson W., Bates, Declan G.
Published in PLoS computational biology (18.12.2020)
Published in PLoS computational biology (18.12.2020)
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Journal Article
Restoring circadian gene profiles in clock networks using synthetic feedback control
Foo, Mathias, Akman, Ozgur E., Bates, Declan G.
Published in NPJ systems biology and applications (15.02.2022)
Published in NPJ systems biology and applications (15.02.2022)
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Journal Article
Computational Simulation of Virtual Patients Reduces Dataset Bias and Improves Machine Learning-Based Detection of ARDS from Noisy Heterogeneous ICU Datasets
Sharafutdinov, Konstantin, Fritsch, Sebastian Johannes, Iravani, Mina, Ghalati, Pejman Farhadi, Saffaran, Sina, Bates, Declan G., Hardman, Jonathan G., Polzin, Richard, Mayer, Hannah, Marx, Gernot, Bickenbach, Johannes, Schuppert, Andreas
Published in IEEE open journal of engineering in medicine and biology (2024)
Published in IEEE open journal of engineering in medicine and biology (2024)
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Journal Article
A Theoretical Framework for Implementable Nucleic Acids Feedback Systems
Paulino, Nuno M. G., Foo, Mathias, de Greef, Tom F. A., Kim, Jongmin, Bates, Declan G.
Published in Bioengineering (Basel) (01.04.2023)
Published in Bioengineering (Basel) (01.04.2023)
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Journal Article
Developing an Artificial Intelligence-Based Representation of a Virtual Patient Model for Real-Time Diagnosis of Acute Respiratory Distress Syndrome
Barakat, Chadi S., Sharafutdinov, Konstantin, Busch, Josefine, Saffaran, Sina, Bates, Declan G., Hardman, Jonathan G., Schuppert, Andreas, Brynjólfsson, Sigurður, Fritsch, Sebastian, Riedel, Morris
Published in Diagnostics (Basel) (01.06.2023)
Published in Diagnostics (Basel) (01.06.2023)
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Journal Article
gcFront: a tool for determining a Pareto front of growth-coupled cell factory designs
Legon, Laurence, Corre, Christophe, Bates, Declan G, Mannan, Ahmad A
Published in Bioinformatics (11.07.2022)
Published in Bioinformatics (11.07.2022)
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Journal Article