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Old cogs, new tricks: the evolution of gene expression in a chromatin context
Talbert, Paul B., Meers, Michael P., Henikoff, Steven
Published in Nature reviews. Genetics (01.05.2019)
Published in Nature reviews. Genetics (01.05.2019)
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Journal Article
Nucleosome density shapes kilobase-scale regulation by a mammalian chromatin remodeler
Abdulhay, Nour J., Hsieh, Laura J., McNally, Colin P., Ostrowski, Megan S., Moore, Camille M., Ketavarapu, Mythili, Kasinathan, Sivakanthan, Nanda, Arjun S., Wu, Ke, Chio, Un Seng, Zhou, Ziling, Goodarzi, Hani, Narlikar, Geeta J., Ramani, Vijay
Published in Nature structural & molecular biology (01.10.2023)
Published in Nature structural & molecular biology (01.10.2023)
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Journal Article
Synaptic, transcriptional and chromatin genes disrupted in autism
De Rubeis, Silvia, He, Xin, Goldberg, Arthur P., Poultney, Christopher S., Samocha, Kaitlin, Ercument Cicek, A., Kou, Yan, Liu, Li, Fromer, Menachem, Walker, Susan, Singh, Tarjinder, Klei, Lambertus, Kosmicki, Jack, Fu, Shih-Chen, Aleksic, Branko, Biscaldi, Monica, Bolton, Patrick F., Brownfeld, Jessica M., Cai, Jinlu, Campbell, Nicholas G., Carracedo, Angel, Chahrour, Maria H., Chiocchetti, Andreas G., Coon, Hilary, Crawford, Emily L., Crooks, Lucy, Curran, Sarah R., Dawson, Geraldine, Duketis, Eftichia, Fernandez, Bridget A., Gallagher, Louise, Geller, Evan, Guter, Stephen J., Sean Hill, R., Ionita-Laza, Iuliana, Jimenez Gonzalez, Patricia, Kilpinen, Helena, Klauck, Sabine M., Kolevzon, Alexander, Lee, Irene, Lei, Jing, Lehtimäki, Terho, Lin, Chiao-Feng, Ma’ayan, Avi, Marshall, Christian R., McInnes, Alison L., Neale, Benjamin, Owen, Michael J., Ozaki, Norio, Parellada, Mara, Parr, Jeremy R., Purcell, Shaun, Puura, Kaija, Rajagopalan, Deepthi, Rehnström, Karola, Reichenberg, Abraham, Sabo, Aniko, Sachse, Michael, Sanders, Stephan J., Schafer, Chad, Schulte-Rüther, Martin, Skuse, David, Stevens, Christine, Szatmari, Peter, Tammimies, Kristiina, Valladares, Otto, Voran, Annette, Wang, Li-San, Weiss, Lauren A., Jeremy Willsey, A., Yu, Timothy W., Yuen, Ryan K. C., Cook, Edwin H., Freitag, Christine M., Gill, Michael, Hultman, Christina M., Lehner, Thomas, Palotie, Aarno, Schellenberg, Gerard D., Sklar, Pamela, State, Matthew W., Sutcliffe, James S., Walsh, Christopher A., Scherer, Stephen W., Zwick, Michael E., Barrett, Jeffrey C., Cutler, David J., Roeder, Kathryn, Devlin, Bernie, Daly, Mark J., Buxbaum, Joseph D.
Published in Nature (London) (13.11.2014)
Published in Nature (London) (13.11.2014)
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Journal Article
Autophagy mediates degradation of nuclear lamina
Dou, Zhixun, Xu, Caiyue, Donahue, Greg, Shimi, Takeshi, Pan, Ji-An, Zhu, Jiajun, Ivanov, Andrejs, Capell, Brian C., Drake, Adam M., Shah, Parisha P., Catanzaro, Joseph M., Daniel Ricketts, M., Lamark, Trond, Adam, Stephen A., Marmorstein, Ronen, Zong, Wei-Xing, Johansen, Terje, Goldman, Robert D., Adams, Peter D., Berger, Shelley L.
Published in Nature (London) (05.11.2015)
Published in Nature (London) (05.11.2015)
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Journal Article
Epigenetic dysregulation from chromosomal transit in micronuclei
Agustinus, Albert S., Al-Rawi, Duaa, Dameracharla, Bhargavi, Raviram, Ramya, Jones, Bailey S. C. L., Stransky, Stephanie, Scipioni, Lorenzo, Luebeck, Jens, Di Bona, Melody, Norkunaite, Danguole, Myers, Robert M., Duran, Mercedes, Choi, Seongmin, Weigelt, Britta, Yomtoubian, Shira, McPherson, Andrew, Toufektchan, Eléonore, Keuper, Kristina, Mischel, Paul S., Mittal, Vivek, Shah, Sohrab P., Maciejowski, John, Storchova, Zuzana, Gratton, Enrico, Ly, Peter, Landau, Dan, Bakhoum, Mathieu F., Koche, Richard P., Sidoli, Simone, Bafna, Vineet, David, Yael, Bakhoum, Samuel F.
Published in Nature (London) (06.07.2023)
Published in Nature (London) (06.07.2023)
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Journal Article
Phosphorylation of histone H3T6 by PKCβI controls demethylation at histone H3K4
Metzger, Eric, Imhof, Axel, Patel, Dharmeshkumar, Kahl, Philip, Hoffmeyer, Katrin, Friedrichs, Nicolaus, Müller, Judith M., Greschik, Holger, Kirfel, Jutta, Ji, Sujuan, Kunowska, Natalia, Beisenherz-Huss, Christian, Günther, Thomas, Buettner, Reinhard, Schüle, Roland
Published in Nature (London) (01.04.2010)
Published in Nature (London) (01.04.2010)
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Journal Article
Charting histone modifications and the functional organization of mammalian genomes
Zhou, Vicky W., Goren, Alon, Bernstein, Bradley E.
Published in Nature reviews. Genetics (01.01.2011)
Published in Nature reviews. Genetics (01.01.2011)
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Journal Article
Histone deacetylase (HDAC) 1 and 2 complexes regulate both histone acetylation and crotonylation in vivo
Kelly, R. D. W., Chandru, A., Watson, P. J., Song, Y., Blades, M., Robertson, N. S., Jamieson, A. G., Schwabe, J. W. R., Cowley, S. M.
Published in Scientific reports (02.10.2018)
Published in Scientific reports (02.10.2018)
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Journal Article
Frequent mutations of chromatin remodeling genes in transitional cell carcinoma of the bladder
Gui, Yaoting, Guo, Guangwu, Huang, Yi, Hu, Xueda, Tang, Aifa, Gao, Shengjie, Wu, Renhua, Chen, Chao, Li, Xianxin, Zhou, Liang, He, Minghui, Li, Zesong, Sun, Xiaojuan, Jia, Wenlong, Chen, Jinnong, Yang, Shangming, Zhou, Fangjian, Zhao, Xiaokun, Wan, Shengqing, Ye, Rui, Liang, Chaozhao, Liu, Zhisheng, Huang, Peide, Liu, Chunxiao, Jiang, Hui, Wang, Yong, Zheng, Hancheng, Sun, Liang, Liu, Xingwang, Jiang, Zhimao, Feng, Dafei, Chen, Jing, Wu, Song, Zou, Jing, Zhang, Zhongfu, Yang, Ruilin, Zhao, Jun, Xu, Congjie, Yin, Weihua, Guan, Zhichen, Ye, Jiongxian, Zhang, Hong, Li, Jingxiang, Kristiansen, Karsten, Nickerson, Michael L, Theodorescu, Dan, Li, Yingrui, Zhang, Xiuqing, Li, Songgang, Wang, Jian, Yang, Huanming, Wang, Jun, Cai, Zhiming
Published in Nature genetics (01.09.2011)
Published in Nature genetics (01.09.2011)
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Journal Article
Single-cell transcriptomics and epigenomics unravel the role of monocytes in neuroblastoma bone marrow metastasis
Fetahu, Irfete S., Esser-Skala, Wolfgang, Dnyansagar, Rohit, Sindelar, Samuel, Rifatbegovic, Fikret, Bileck, Andrea, Skos, Lukas, Bozsaky, Eva, Lazic, Daria, Shaw, Lisa, Tötzl, Marcus, Tarlungeanu, Dora, Bernkopf, Marie, Rados, Magdalena, Weninger, Wolfgang, Tomazou, Eleni M., Bock, Christoph, Gerner, Christopher, Ladenstein, Ruth, Farlik, Matthias, Fortelny, Nikolaus, Taschner-Mandl, Sabine
Published in Nature communications (26.06.2023)
Published in Nature communications (26.06.2023)
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Journal Article
Mechanism for controlled assembly of transcriptional condensates by Aire
Huoh, Yu-San, Zhang, Qianxia, Törner, Ricarda, Baca, Sylvan C., Arthanari, Haribabu, Hur, Sun
Published in Nature immunology (01.09.2024)
Published in Nature immunology (01.09.2024)
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Journal Article
Quantifying propagation of DNA methylation and hydroxymethylation with iDEMS
Stewart-Morgan, Kathleen R., Requena, Cristina E., Flury, Valentin, Du, Qian, Heckhausen, Zoe, Hajkova, Petra, Groth, Anja
Published in Nature cell biology (01.01.2023)
Published in Nature cell biology (01.01.2023)
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Journal Article
Non-CG methylation and multiple histone profiles associate child abuse with immune and small GTPase dysregulation
Lutz, Pierre-Eric, Chay, Marc-Aurèle, Pacis, Alain, Chen, Gary G., Aouabed, Zahia, Maffioletti, Elisabetta, Théroux, Jean-François, Grenier, Jean-Christophe, Yang, Jennie, Aguirre, Maria, Ernst, Carl, Redensek, Adriana, van Kempen, Léon C., Yalcin, Ipek, Kwan, Tony, Mechawar, Naguib, Pastinen, Tomi, Turecki, Gustavo
Published in Nature communications (18.02.2021)
Published in Nature communications (18.02.2021)
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Journal Article
Enhancer histone-QTLs are enriched on autoimmune risk haplotypes and influence gene expression within chromatin networks
Pelikan, Richard C., Kelly, Jennifer A., Fu, Yao, Lareau, Caleb A., Tessneer, Kandice L., Wiley, Graham B., Wiley, Mandi M., Glenn, Stuart B., Harley, John B., Guthridge, Joel M., James, Judith A., Aryee, Martin J., Montgomery, Courtney, Gaffney, Patrick M.
Published in Nature communications (25.07.2018)
Published in Nature communications (25.07.2018)
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Journal Article