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Rhizobia: from saprophytes to endosymbionts
Poole, Philip, Ramachandran, Vinoy, Terpolilli, Jason
Published in Nature reviews. Microbiology (01.05.2018)
Published in Nature reviews. Microbiology (01.05.2018)
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Journal Article
Within-host evolution of bacterial pathogens
Didelot, Xavier, Walker, A. Sarah, Peto, Tim E., Crook, Derrick W., Wilson, Daniel J.
Published in Nature reviews. Microbiology (01.03.2016)
Published in Nature reviews. Microbiology (01.03.2016)
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Journal Article
Call of the wild: antibiotic resistance genes in natural environments
Allen, Heather K., Donato, Justin, Wang, Helena Huimi, Cloud-Hansen, Karen A., Davies, Julian, Handelsman, Jo
Published in Nature reviews. Microbiology (01.04.2010)
Published in Nature reviews. Microbiology (01.04.2010)
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Journal Article
Butyrate-producing Clostridium cluster XIVa species specifically colonize mucins in an in vitro gut model
Van den Abbeele, Pieter, Belzer, Clara, Goossens, Margot, Kleerebezem, Michiel, De Vos, Willem M, Thas, Olivier, De Weirdt, Rosemarie, Kerckhof, Frederiek-Maarten, Van de Wiele, Tom
Published in The ISME Journal (01.05.2013)
Published in The ISME Journal (01.05.2013)
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Journal Article
Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill
Mason, Olivia U, Hazen, Terry C, Borglin, Sharon, Chain, Patrick S G, Dubinsky, Eric A, Fortney, Julian L, Han, James, Holman, Hoi-Ying N, Hultman, Jenni, Lamendella, Regina, Mackelprang, Rachel, Malfatti, Stephanie, Tom, Lauren M, Tringe, Susannah G, Woyke, Tanja, Zhou, Jizhong, Rubin, Edward M, Jansson, Janet K
Published in The ISME Journal (01.09.2012)
Published in The ISME Journal (01.09.2012)
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Journal Article
The microbiota continuum along the female reproductive tract and its relation to uterine-related diseases
Chen, Chen, Song, Xiaolei, Wei, Weixia, Zhong, Huanzi, Dai, Juanjuan, Lan, Zhou, Li, Fei, Yu, Xinlei, Feng, Qiang, Wang, Zirong, Xie, Hailiang, Chen, Xiaomin, Zeng, Chunwei, Wen, Bo, Zeng, Liping, Du, Hui, Tang, Huiru, Xu, Changlu, Xia, Yan, Xia, Huihua, Yang, Huanming, Wang, Jian, Wang, Jun, Madsen, Lise, Brix, Susanne, Kristiansen, Karsten, Xu, Xun, Li, Junhua, Wu, Ruifang, Jia, Huijue
Published in Nature communications (17.10.2017)
Published in Nature communications (17.10.2017)
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Journal Article
Intramolecular chaperone-mediated secretion of an Rhs effector toxin by a type VI secretion system
Pei, Tong-Tong, Li, Hao, Liang, Xiaoye, Wang, Zeng-Hang, Liu, Guangfeng, Wu, Li-Li, Kim, Haeun, Xie, Zhiping, Yu, Ming, Lin, Shuangjun, Xu, Ping, Dong, Tao G.
Published in Nature communications (20.04.2020)
Published in Nature communications (20.04.2020)
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Journal Article
Omnipose: a high-precision morphology-independent solution for bacterial cell segmentation
Cutler, Kevin J., Stringer, Carsen, Lo, Teresa W., Rappez, Luca, Stroustrup, Nicholas, Brook Peterson, S., Wiggins, Paul A., Mougous, Joseph D.
Published in Nature methods (01.11.2022)
Published in Nature methods (01.11.2022)
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Journal Article
Establishing microbial composition measurement standards with reference frames
Morton, James T., Marotz, Clarisse, Washburne, Alex, Silverman, Justin, Zaramela, Livia S., Edlund, Anna, Zengler, Karsten, Knight, Rob
Published in Nature communications (20.06.2019)
Published in Nature communications (20.06.2019)
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Journal Article
Evolutionary trade-offs associated with loss of PmrB function in host-adapted Pseudomonas aeruginosa
Bricio-Moreno, Laura, Sheridan, Victoria H., Goodhead, Ian, Armstrong, Stuart, Wong, Janet K.L., Waters, Elaine M., Sarsby, Joscelyn, Panagiotou, Stavros, Dunn, James, Chakraborty, Adrita, Fang, Yongliang, Griswold, Karl E., Winstanley, Craig, Fothergill, Joanne L., Kadioglu, Aras, Neill, Daniel R.
Published in Nature communications (06.07.2018)
Published in Nature communications (06.07.2018)
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Journal Article
Molecular mechanisms of antibiotic resistance
Blair, Jessica M. A., Webber, Mark A., Baylay, Alison J., Ogbolu, David O., Piddock, Laura J. V.
Published in Nature reviews. Microbiology (01.01.2015)
Published in Nature reviews. Microbiology (01.01.2015)
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Journal Article
Catabolism of dimethylsulphoniopropionate: microorganisms, enzymes and genes
Curson, Andrew R. J., Todd, Jonathan D., Sullivan, Matthew J., Johnston, Andrew W. B.
Published in Nature reviews. Microbiology (01.12.2011)
Published in Nature reviews. Microbiology (01.12.2011)
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Journal Article
Effect of antibiotic treatment on Oxalobacter formigenes colonization of the gut microbiome and urinary oxalate excretion
Nazzal, Lama, Francois, Fritz, Henderson, Nora, Liu, Menghan, Li, Huilin, Koh, Hyunwook, Wang, Chan, Gao, Zhan, Perez, Guillermo Perez, Asplin, John R., Goldfarb, David S, Blaser, Martin J
Published in Scientific reports (12.08.2021)
Published in Scientific reports (12.08.2021)
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Journal Article
Identification of mucin degraders of the human gut microbiota
Raimondi, Stefano, Musmeci, Eliana, Candeliere, Francesco, Amaretti, Alberto, Rossi, Maddalena
Published in Scientific reports (27.05.2021)
Published in Scientific reports (27.05.2021)
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Journal Article
Nanopore full length 16S rRNA gene sequencing increases species resolution in bacterial biomarker discovery
Aja-Macaya, Pablo, Conde-Pérez, Kelly, Trigo-Tasende, Noelia, Buetas, Elena, Nasser-Ali, Mohammed, Nión, Paula, Rumbo-Feal, Soraya, Ladra, Susana, Bou, Germán, Mira, Álex, Vallejo, Juan A., Poza, Margarita
Published in Scientific reports (21.07.2025)
Published in Scientific reports (21.07.2025)
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Journal Article