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SciPy 1.0: fundamental algorithms for scientific computing in Python

by Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul
Published in Nature methods (01.03.2020)

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5 Hands-on 3: Introduction to developing Python computational pipelines for predictive machine learning modelling of livestock data

by Tulpan, Dan
Published in Journal of animal science (14.09.2024)

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GSEApy: a comprehensive package for performing gene set enrichment analysis in Python

by Fang, Zhuoqing, Liu, Xinyuan, Peltz, Gary
Published in Bioinformatics (Oxford, England) (01.01.2023)

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Algorithms on trees and graphs : with python code

by Valiente, Gabriel
Year of Publication 2021

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pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods

by Behdenna, Abdelkader, Colange, Maximilien, Haziza, Julien, Gema, Aryo, Appé, Guillaume, Azencott, Chloé-Agathe, Nordor, Akpéli
Published in BMC bioinformatics (07.12.2023)

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Scikit-Dimension: A Python Package for Intrinsic Dimension Estimation

by Bac, Jonathan, Mirkes, Evgeny M., Gorban, Alexander N., Tyukin, Ivan, Zinovyev, Andrei
Published in Entropy (Basel, Switzerland) (19.10.2021)

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Transfreq: A Python package for computing the theta‐to‐alpha transition frequency from resting state electroencephalographic data

by Vallarino, Elisabetta, Sommariva, Sara, Famà, Francesco, Piana, Michele, Nobili, Flavio, Arnaldi, Dario
Published in Human brain mapping (01.12.2022)

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MEWpy: a computational strain optimization workbench in Python

by Pereira, Vítor, Cruz, Fernando, Rocha, Miguel
Published in Bioinformatics (Oxford, England) (25.08.2021)

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MASSpy: Building, simulating, and visualizing dynamic biological models in Python using mass action kinetics

by Haiman, Zachary B., Zielinski, Daniel C., Koike, Yuko, Yurkovich, James T., Palsson, Bernhard O.
Published in PLoS computational biology (28.01.2021)

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mzapy: An Open-Source Python Library Enabling Efficient Extraction and Processing of Ion Mobility Spectrometry-Mass Spectrometry Data in the MZA File Format

by Ross, Dylan, Bilbao, Aivett, Lee, Joon-Yong, Zheng, Xueyun
Published in Analytical chemistry (Washington) (27.06.2023)

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Innovative UAV LiDAR Generated Point-Cloud Processing Algorithm in Python for Unsupervised Detection and Analysis of Agricultural Field-Plots

by Polák, Michal, Miřijovský, Jakub, Hernándiz, Alba E., Špíšek, Zdeněk, Koprna, Radoslav, Humplík, Jan F.
Published in Remote sensing (Basel, Switzerland) (10.08.2021)

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AMADAR: a python-based package for large scale prediction of Diels–Alder transition state geometries and IRC path analysis

by Isamura, Bienfait K., Lobb, Kevin A.
Published in Journal of cheminformatics (15.06.2022)

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Local Asymmetric Gaussian Fitting Algorithm for Enhanced Peak Detection of Liquid Chromatography–High Resolution Mass Spectrometry Data

by Zou, Shengsi, Cui, Qingxiao, Liu, Jinyue, Wu, Qiong, Zhu, Lijia, Chen, Da, Du, Yiping, Wu, Ting
Published in Analytical chemistry (Washington) (27.05.2025)

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A Machine Learning Python-Based Search Engine Optimization Audit Software

by Roumeliotis, Konstantinos I., Tselikas, Nikolaos D.
Published in Informatics (Basel) (01.09.2023)

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Data Structures and Program Design Using Python - A Self-Teaching Introduction

by Malhotra, D, Malhotra, N
Year of Publication 2021

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Interpreting Machine Learning Models - Learn Model Interpretability and Explainability Methods

by Anirban Nandi, Aditya Kumar Pal
Year of Publication 2022

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Data-Driven Hint Generation in Vast Solution Spaces: a Self-Improving Python Programming Tutor

by Rivers, Kelly, Koedinger, Kenneth R.
Published in International journal of artificial intelligence in education (01.03.2017)

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SAP2000 API Expert: a custom generative pre-trained transformer (GPT) for converting narrative structural engineering problems to SAP2000 API codes

by Djafar-Henni, Nesreddine, Khelaifia, Akram, Djafar-Henni, Mohamed, Guettala, Salah, Djedoui, Nassim
Published in Asian journal of civil engineering. Building and housing (01.10.2025)

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PyTirCam-1.0: A Python Model to Manage Thermal Infrared Camera Data

by Calusi, Benedetta, Andronico, Daniele, Pecora, Emilio, Biale, Emilio, Cerminara, Matteo
Published in Remote sensing (Basel, Switzerland) (11.12.2020)

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Functional Python Programming, 3rd Edition: Use a Functional Approach to Write Succinct, Expressive, and Efficient Python Code

by Lott, Steven F, Bánffy, Ricardo
Year of Publication 2022

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