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    Evaluation of Microarray Preprocessing Algorithms Based on Concordance with RT-PCR in Clinical Samples
                                      
                                            Gyorffy, Balazs,                              Molnar, Bela,                              Lage, Hermann,                              Szallasi, Zoltan,                              Eklund, Aron C.                              
Published in PloS one (21.05.2009)
                   
      
      
                                                  Published in PloS one (21.05.2009)
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          Technology dictates algorithms: recent developments in read alignment
                                      
                                            Alser, Mohammed,                              Rotman, Jeremy,                              Deshpande, Dhrithi,                              Taraszka, Kodi,                              Shi, Huwenbo,                              Baykal, Pelin Icer,                              Yang, Harry Taegyun,                              Xue, Victor,                              Knyazev, Sergey,                              Singer, Benjamin D.,                              Balliu, Brunilda,                              Koslicki, David,                              Skums, Pavel,                              Zelikovsky, Alex,                              Alkan, Can,                              Mutlu, Onur,                              Mangul, Serghei                              
Published in Genome Biology (26.08.2021)
                   
      
      
                                                  Published in Genome Biology (26.08.2021)
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          Parallel comparison of Illumina RNA-Seq and Affymetrix microarray platforms on transcriptomic profiles generated from 5-aza-deoxy-cytidine treated HT-29 colon cancer cells and simulated datasets
                                      
                                            Xu, Xiao,                              Zhang, Yuanhao,                              Williams, Jennie,                              Antoniou, Eric,                              McCombie, W Richard,                              Wu, Song,                              Zhu, Wei,                              Davidson, Nicholas O,                              Denoya, Paula,                              Li, Ellen                              
Published in BMC bioinformatics (28.06.2013)
                   
      
      
                                                  Published in BMC bioinformatics (28.06.2013)
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          Pangenomic genotyping with the marker array
                                      
                                            Mun, Taher,                              Vaddadi, Naga Sai Kavya,                              Langmead, Ben                              
Published in Algorithms for molecular biology (05.05.2023)
                   
      
      
                                                  Published in Algorithms for molecular biology (05.05.2023)
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          Analysis and correction of compositional bias in sparse sequencing count data
                                      
                                            Kumar, M. Senthil,                              Slud, Eric V.,                              Okrah, Kwame,                              Hicks, Stephanie C.,                              Hannenhalli, Sridhar,                              Corrada Bravo, Héctor                              
Published in BMC genomics (06.11.2018)
                   
      
      
                                                  Published in BMC genomics (06.11.2018)
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          Machine learning overcomes human bias in the discovery of self-assembling peptides
                                      
                                            Batra, Rohit,                              Loeffler, Troy D.,                              Chan, Henry,                              Srinivasan, Srilok,                              Cui, Honggang,                              Korendovych, Ivan V.,                              Nanda, Vikas,                              Palmer, Liam C.,                              Solomon, Lee A.,                              Fry, H. Christopher,                              Sankaranarayanan, Subramanian K. R. S.                              
Published in Nature chemistry (01.12.2022)
                   
      
      
                                                  Published in Nature chemistry (01.12.2022)
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          Integration of microarray data and literature mining identifies a sex bias in DPP4+CD4+ T cells in HIV-1 infection
                                      
                                            Stubbe, Hans Christian,                              Dahlke, Christine,                              Rotheneder, Katharina,                              Stirner, Renate,                              Roider, Julia,                              Conca, Raffaele,                              Seybold, Ulrich,                              Bogner, Johannes,                              Addo, Marylyn Martina,                              Draenert, Rika                              
Published in PloS one (18.09.2020)
                   
      
      
                                                  Published in PloS one (18.09.2020)
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          Non-circular signals for nested array: sum–difference co-array and direction of arrival estimation algorithm
                                      
                                            Yunfei, Wang,                              Jinqing, Shen,                              Xiaofei, Zhang,                              Yi, He,                              Xiangrui, Dai                              
Published in IET radar, sonar & navigation (01.01.2020)
                   
      
      
                                                  Published in IET radar, sonar & navigation (01.01.2020)
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          Discovery of novel variants in genotyping arrays improves genotype retention and reduces ascertainment bias
                                      
                                            Didion, John P,                              Yang, Hyuna,                              Sheppard, Keith,                              Fu, Chen-Ping,                              McMillan, Leonard,                              de Villena, Fernando Pardo-Manuel,                              Churchill, Gary A                              
Published in BMC genomics (19.01.2012)
                   
      
      
                                                  Published in BMC genomics (19.01.2012)
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          OPARC: Optimal and Precise Array Response Control Algorithm-Part I: Fundamentals
                                      
                                            Zhang, Xuejing,                              He, Zishu,                              Xia, Xiang-Gen,                              Liao, Bin,                              Zhang, Xuepan,                              Yang, Yue                              
Published in IEEE transactions on signal processing (01.02.2019)
                   
      
      
                                                  Published in IEEE transactions on signal processing (01.02.2019)
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          Sequence-specific bias correction for RNA-seq data using recurrent neural networks
                                      
                                            Zhang, Yao-zhong,                              Yamaguchi, Rui,                              Imoto, Seiya,                              Miyano, Satoru                              
Published in BMC genomics (25.01.2017)
                   
      
      
                                                  Published in BMC genomics (25.01.2017)
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          Avoiding the pitfalls of gene set enrichment analysis with SetRank
                                      
                                            Simillion, Cedric,                              Liechti, Robin,                              Lischer, Heidi E.L.,                              Ioannidis, Vassilios,                              Bruggmann, Rémy                              
Published in BMC bioinformatics (04.03.2017)
                   
      
      
                                                  Published in BMC bioinformatics (04.03.2017)
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          Efficient analysis of large datasets and sex bias with ADMIXTURE
                                      
                                            Shringarpure, Suyash S.,                              Bustamante, Carlos D.,                              Lange, Kenneth,                              Alexander, David H.                              
Published in BMC bioinformatics (23.05.2016)
                   
      
      
                                                  Published in BMC bioinformatics (23.05.2016)
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          Improved DOA estimation algorithm for co-prime linear arrays using root-MUSIC algorithm
                                      
                                            Zhang, Dong,                              Zhang, Yongshun,                              Zheng, Guimei,                              Feng, Cunqian,                              Tang, Jun                              
Published in Electronics letters (31.08.2017)
                   
      
      
                                                  Published in Electronics letters (31.08.2017)
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          Characterizing dye bias in microarray experiments
                                      
                                            Dobbin, K. K.,                              Kawasaki, E. S.,                              Petersen, D. W.,                              Simon, R. M.                              
Published in Bioinformatics (15.05.2005)
                   
      
      
                                                  Published in Bioinformatics (15.05.2005)
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          Comprehensive high-throughput arrays for relative methylation (CHARM)
                                      
                                            Irizarry, Rafael A.,                              Ladd-Acosta, Christine,                              Carvalho, Benilton,                              Wu, Hao,                              Brandenburg, Sheri A.,                              Jeddeloh, Jeffrey A.,                              Wen, Bo,                              Feinberg, Andrew P.                              
Published in Genome Research (01.05.2008)
                   
      
      
                                                  Published in Genome Research (01.05.2008)
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