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ISMRM Raw data format: A proposed standard for MRI raw datasets
Inati, Souheil J., Naegele, Joseph D., Zwart, Nicholas R., Roopchansingh, Vinai, Lizak, Martin J., Hansen, David C., Liu, Chia‐Ying, Atkinson, David, Kellman, Peter, Kozerke, Sebastian, Xue, Hui, Campbell‐Washburn, Adrienne E., Sørensen, Thomas S., Hansen, Michael S.
Published in Magnetic resonance in medicine (01.01.2017)
Published in Magnetic resonance in medicine (01.01.2017)
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Journal Article
Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
Semi‐blind‐trace algorithm for self‐supervised attenuation of trace‐wise coherent noise
Abedi, Mohammad Mahdi, Pardo, David, Alkhalifah, Tariq
Published in Geophysical Prospecting (01.03.2024)
Published in Geophysical Prospecting (01.03.2024)
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Journal Article
MXene/WO 3 Sensor Array with Improved SNN Algorithm for Accurate Identification of Toxic Gases
Guo, Liangchao, Wang, Junke, Han, Haoran, Wang, Peng, Lu, Yunxiang, Yuan, Qilong, Du, Chunyu, Yin, Shuo, Zhou, Ye, Zhang, Chao
Published in ACS applied materials & interfaces (13.11.2024)
Published in ACS applied materials & interfaces (13.11.2024)
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Journal Article
Inferring copy number and genotype in tumour exome data
Amarasinghe, Kaushalya C, Li, Jason, Hunter, Sally M, Ryland, Georgina L, Cowin, Prue A, Campbell, Ian G, Halgamuge, Saman K
Published in BMC genomics (28.08.2014)
Published in BMC genomics (28.08.2014)
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Journal Article
PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces
Singh, Gursimran, Chharia, Aviral, Upadhyay, Rahul, Kumar, Vinay, Longo, Luca
Published in PloS one (06.08.2025)
Published in PloS one (06.08.2025)
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Journal Article
Image processing for electron microscopy single-particle analysis using XMIPP
Scheres, Sjors H W, Núñez-Ramírez, Rafael, Sorzano, Carlos O S, Carazo, José María, Marabini, Roberto
Published in Nature protocols (01.06.2008)
Published in Nature protocols (01.06.2008)
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Journal Article
Replacing non-biomedical concepts improves embedding of biomedical concepts
Niyonkuru, Enock, Gomez, Mauricio Soto, Casarighi, Elena, Antogiovanni, Stephan, Blau, Hannah, Reese, Justin T., Valentini, Giorgio, Robinson, Peter N.
Published in PloS one (05.05.2025)
Published in PloS one (05.05.2025)
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Journal Article
SciPy 1.0: fundamental algorithms for scientific computing in Python
Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul
Published in Nature methods (01.03.2020)
Published in Nature methods (01.03.2020)
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Journal Article
Bioinformatic pipelines in Python with Leaf
Napolitano, Francesco, Mariani-Costantini, Renato, Tagliaferri, Roberto
Published in BMC bioinformatics (21.06.2013)
Published in BMC bioinformatics (21.06.2013)
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Journal Article
PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data
Georgi, Benjamin, Costa, Ivan Gesteira, Schliep, Alexander
Published in BMC bioinformatics (06.01.2010)
Published in BMC bioinformatics (06.01.2010)
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Journal Article
Hidden Markov modeling for maximum probability neuron reconstruction
Athey, Thomas L., Tward, Daniel J., Mueller, Ulrich, Vogelstein, Joshua T., Miller, Michael I.
Published in Communications biology (25.04.2022)
Published in Communications biology (25.04.2022)
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Journal Article