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ISMRM Raw data format: A proposed standard for MRI raw datasets

by Inati, Souheil J., Naegele, Joseph D., Zwart, Nicholas R., Roopchansingh, Vinai, Lizak, Martin J., Hansen, David C., Liu, Chia‐Ying, Atkinson, David, Kellman, Peter, Kozerke, Sebastian, Xue, Hui, Campbell‐Washburn, Adrienne E., Sørensen, Thomas S., Hansen, Michael S.
Published in Magnetic resonance in medicine (01.01.2017)

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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS

by Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)

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Sb 2 S 3 -Based Dynamically Tuned Color Filter Array via Genetic Algorithm

by Wei, Xueling, Nong, Jie, Zhang, Yiyi, Ma, Hansi, Huang, Rixing, Yuan, Zhenkun, Zhang, Zhenfu, Zhang, Zhenrong, Yang, Junbo
Published in Nanomaterials (Basel, Switzerland) (24.04.2023)

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Semi‐blind‐trace algorithm for self‐supervised attenuation of trace‐wise coherent noise

by Abedi, Mohammad Mahdi, Pardo, David, Alkhalifah, Tariq
Published in Geophysical Prospecting (01.03.2024)

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Sb[sub.2]S[sub.3]-Based Dynamically Tuned Color Filter Array via Genetic Algorithm

by Wei, Xueling, Nong, Jie, Zhang, Yiyi, Ma, Hansi, Huang, Rixing, Yuan, Zhenkun, Zhang, Zhenfu, Zhang, Zhenrong, Yang, Junbo
Published in Nanomaterials (Basel, Switzerland) (01.04.2023)

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Manifold Markov chain Monte Carlo methods for Bayesian inference in diffusion models

by Graham, Matthew M., Thiery, Alexandre H., Beskos, Alexandros
Published in Journal of the Royal Statistical Society. Series B, Statistical methodology (01.09.2022)

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Fast and flexible processing of large FRET image stacks using the FRET-IBRA toolkit

by Munglani, Gautam, Vogler, Hannes, Grossniklaus, Ueli
Published in PLoS computational biology (01.04.2022)

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Gradient free stochastic training of ANNs, with local approximation in partitions

by Bakas, N. P., Langousis, A., Nicolaou, M. A., Chatzichristofis, S. A.
Published in Stochastic environmental research and risk assessment (01.07.2023)

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An interactive Python-based data processing platform for single particle and single cell ICP-MS

by Lockwood, Thomas E, Gonzalez de Vega, Raquel, Clases, David
Published in Journal of analytical atomic spectrometry (03.11.2021)

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Replacing non-biomedical concepts improves embedding of biomedical concepts

by Niyonkuru, Enock, Gomez, Mauricio Soto, Casarighi, Elena, Antogiovanni, Stephan, Blau, Hannah, Reese, Justin T., Valentini, Giorgio, Robinson, Peter N.
Published in PloS one (05.05.2025)

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PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data

by Georgi, Benjamin, Costa, Ivan Gesteira, Schliep, Alexander
Published in BMC bioinformatics (06.01.2010)

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Noisecut: a python package for noise-tolerant classification of binary data using prior knowledge integration and max-cut solutions

by Samadi, Moein E., Mirzaieazar, Hedieh, Mitsos, Alexander, Schuppert, Andreas
Published in BMC bioinformatics (20.04.2024)

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Uncovering structural ensembles from single-particle cryo-EM data using cryoDRGN

by Kinman, Laurel F., Powell, Barrett M., Zhong, Ellen D., Berger, Bonnie, Davis, Joseph H.
Published in Nature protocols (01.02.2023)

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Python for chemistry : an introduction to python algorithms, simulations, and programing for chemistry

by Kanagasabapathy, M.
Year of Publication 2023

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Toward a unified framework for interpreting machine-learning models in neuroimaging

by Kohoutová, Lada, Heo, Juyeon, Cha, Sungmin, Lee, Sungwoo, Moon, Taesup, Wager, Tor D., Woo, Choong-Wan
Published in Nature protocols (01.04.2020)

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MagPySV: A Python Package for Processing and Denoising Geomagnetic Observatory Data

by Cox, G. A., Brown, W. J., Billingham, L., Holme, R.
Published in Geochemistry, geophysics, geosystems : G3 (01.09.2018)

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Design of Heuristic Algorithms for Hard Optimization: With Python Codes for the Travelling Salesman Problem

by Taillard, Eric D
Year of Publication 2023

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eBook Publication

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ITEP: An integrated toolkit for exploration of microbial pan-genomes

by Benedict, Matthew N, Henriksen, James R, Metcalf, William W, Whitaker, Rachel J, Price, Nathan D
Published in BMC genomics (03.01.2014)

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Differentiation of Bone Metastasis in Elderly Patients With Lung Adenocarcinoma Using Multiple Machine Learning Algorithms

by Zhou, Cheng-Mao, Wang, Ying, Xue, Qiong, Zhu, Yu
Published in Cancer control (01.01.2023)

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QFlow lite dataset: A machine-learning approach to the charge states in quantum dot experiments

by Zwolak, Justyna P., Kalantre, Sandesh S., Wu, Xingyao, Ragole, Stephen, Taylor, Jacob M.
Published in PloS one (17.10.2018)

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