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    Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
                                      
                                            Johnson, Jeanette A. I.,                              Tsang, Ashley P.,                              Mitchell, Jacob T.,                              Zhou, David L.,                              Bowden, Julia,                              Davis-Marcisak, Emily,                              Sherman, Thomas,                              Liefeld, Ted,                              Loth, Melanie,                              Goff, Loyal A.,                              Zimmerman, Jacquelyn W.,                              Kinny-Köster, Ben,                              Jaffee, Elizabeth M.,                              Tamayo, Pablo,                              Mesirov, Jill P.,                              Reich, Michael,                              Fertig, Elana J.,                              Stein-O’Brien, Genevieve L.                              
Published in Nature protocols (01.12.2023)
                   
      
      
                                                  Published in Nature protocols (01.12.2023)
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          K2 variable catalogue – II. Machine learning classification of variable stars and eclipsing binaries in K2 fields 0–4
                                      
                                            Armstrong, D. J.,                              Kirk, J.,                              Lam, K. W. F.,                              McCormac, J.,                              Osborn, H. P.,                              Spake, J.,                              Walker, S.,                              Brown, D. J. A.,                              Kristiansen, M. H.,                              Pollacco, D.,                              West, R.,                              Wheatley, P. J.                              
Published in Monthly notices of the Royal Astronomical Society (21.02.2016)
                   
      
      
                                                  Published in Monthly notices of the Royal Astronomical Society (21.02.2016)
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          FeAture Explorer (FAE): A tool for developing and comparing radiomics models
                                      
                                            Song, Yang,                              Zhang, Jing,                              Zhang, Yu-dong,                              Hou, Ying,                              Yan, Xu,                              Wang, Yida,                              Zhou, Minxiong,                              Yao, Ye-feng,                              Yang, Guang                              
Published in PloS one (17.08.2020)
                   
      
      
                                                  Published in PloS one (17.08.2020)
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          pyOpenMS: A Python-based interface to the OpenMS mass-spectrometry algorithm library
                                      
                                            Röst, Hannes L.,                              Schmitt, Uwe,                              Aebersold, Ruedi,                              Malmström, Lars                              
Published in Proteomics (Weinheim) (01.01.2014)
                   
      
      
                                                  Published in Proteomics (Weinheim) (01.01.2014)
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          MetPy: A Meteorological Python Library for Data Analysis and Visualization
                                      
                                            May, Ryan M.,                              Goebbert, Kevin H.,                              Thielen, Jonathan E.,                              Leeman, John R.,                              Camron, M. Drew,                              Bruick, Zachary,                              Bruning, Eric C.,                              Manser, Russell P.,                              Arms, Sean C.,                              Marsh, Patrick T.                              
Published in Bulletin of the American Meteorological Society (01.10.2022)
                   
      
      
                                                  Published in Bulletin of the American Meteorological Society (01.10.2022)
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          PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data
                                      
                                            Georgi, Benjamin,                              Costa, Ivan Gesteira,                              Schliep, Alexander                              
Published in BMC bioinformatics (06.01.2010)
                   
      
      
                                                  Published in BMC bioinformatics (06.01.2010)
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          CoastSat: A Google Earth Engine-enabled Python toolkit to extract shorelines from publicly available satellite imagery
                                      
                                            Vos, Kilian,                              Splinter, Kristen D.,                              Harley, Mitchell D.,                              Simmons, Joshua A.,                              Turner, Ian L.                              
Published in Environmental modelling & software : with environment data news (01.12.2019)
                   
      
      
                                                  Published in Environmental modelling & software : with environment data news (01.12.2019)
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          Plant mitochondrial genome map (PMGmap): A software tool for the comprehensive visualization of coding, noncoding and genome features of plant mitochondrial genomes
                                      
                                            Zhang, Xinyi,                              Chen, Haimei,                              Ni, Yang,                              Wu, Bin,                              Li, Jingling,                              Burzyński, Artur,                              Liu, Chang                              
Published in Molecular ecology resources (01.07.2024)
                   
      
      
                                                  Published in Molecular ecology resources (01.07.2024)
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          Uncovering structural ensembles from single-particle cryo-EM data using cryoDRGN
                                      
                                            Kinman, Laurel F.,                              Powell, Barrett M.,                              Zhong, Ellen D.,                              Berger, Bonnie,                              Davis, Joseph H.                              
Published in Nature protocols (01.02.2023)
                   
      
      
                                                  Published in Nature protocols (01.02.2023)
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          Map-matching poor-quality GPS data in urban environments: the pgMapMatch package
                                      
                                            Millard-Ball, Adam,                              Hampshire, Robert C.,                              Weinberger, Rachel R.                              
Published in Transportation planning and technology (18.08.2019)
                   
      
      
                                                  Published in Transportation planning and technology (18.08.2019)
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          Toward a unified framework for interpreting machine-learning models in neuroimaging
                                      
                                            Kohoutová, Lada,                              Heo, Juyeon,                              Cha, Sungmin,                              Lee, Sungwoo,                              Moon, Taesup,                              Wager, Tor D.,                              Woo, Choong-Wan                              
Published in Nature protocols (01.04.2020)
                   
      
      
                                                  Published in Nature protocols (01.04.2020)
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          Processor Array Architectures for Scalable Radix 4 Montgomery Modular Multiplication Algorithm
                                      
                                            Ibrahim, A,                              Gebali, F,                              Elsimary, H,                              Nassar, A                              
Published in IEEE transactions on parallel and distributed systems (01.07.2011)
                   
      
      
                                                  Published in IEEE transactions on parallel and distributed systems (01.07.2011)
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          FaultQuake: An open-source Python tool for estimating Seismic Activity Rates in faults
                                      
                                            Tavakolizadeh, Nasrin,                              Mohammadigheymasi, Hamzeh,                              Visini, Francesco,                              Pombo, Nuno                              
Published in Computers & geosciences (01.09.2024)
                   
      
      
                                                  Published in Computers & geosciences (01.09.2024)
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