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Estimates of penetrance for recurrent pathogenic copy-number variations
Rosenfeld, Jill A., Coe, Bradley P., Eichler, Evan E., Cuckle, Howard, Shaffer, Lisa G.
Published in Genetics in medicine (01.06.2013)
Published in Genetics in medicine (01.06.2013)
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Journal Article
Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis
Down, Thomas A, Rakyan, Vardhman K, Turner, Daniel J, Flicek, Paul, Li, Heng, Kulesha, Eugene, Gräf, Stefan, Johnson, Nathan, Herrero, Javier, Tomazou, Eleni M, Thorne, Natalie P, Bäckdahl, Liselotte, Herberth, Marlis, Howe, Kevin L, Jackson, David K, Miretti, Marcos M, Marioni, John C, Birney, Ewan, Hubbard, Tim J P, Durbin, Richard, Tavaré, Simon, Beck, Stephan
Published in Nature biotechnology (01.07.2008)
Published in Nature biotechnology (01.07.2008)
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Journal Article
Integrated Genetic and Epigenetic Analysis Identifies Haplotype-Specific Methylation in the FTO Type 2 Diabetes and Obesity Susceptibility Locus
Bell, Christopher G., Finer, Sarah, Lindgren, Cecilia M., Wilson, Gareth A., Rakyan, Vardhman K., Teschendorff, Andrew E., Akan, Pelin, Stupka, Elia, Down, Thomas A., Prokopenko, Inga, Morison, Ian M., Mill, Jonathan, Pidsley, Ruth, Deloukas, Panos, Frayling, Timothy M., Hattersley, Andrew T., McCarthy, Mark I., Beck, Stephan, Hitman, Graham A.
Published in PloS one (18.11.2010)
Published in PloS one (18.11.2010)
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Journal Article
Comparative phylogenomics of the food-borne pathogen Campylobacter jejuni reveals genetic markers predictive of infection source
Champion, O.L, Gaunt, M.W, Gundogdu, O, Elmi, A, Witney, A.A, Hinds, J, Dorrell, N, Wren, B.W
Published in Proceedings of the National Academy of Sciences - PNAS (01.11.2005)
Published in Proceedings of the National Academy of Sciences - PNAS (01.11.2005)
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Journal Article
Empirical Bayes PCA in high dimensions
Zhong, Xinyi, Su, Chang, Fan, Zhou
Published in Journal of the Royal Statistical Society. Series B, Statistical methodology (01.07.2022)
Published in Journal of the Royal Statistical Society. Series B, Statistical methodology (01.07.2022)
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Journal Article
QChIPat: a quantitative method to identify distinct binding patterns for two biological ChIP-seq samples in different experimental conditions
Liu, Bin, Yi, Jimmy, SV, Aishwarya, Lan, Xun, Ma, Yilin, Huang, Tim HM, Leone, Gustavo, Jin, Victor X
Published in BMC genomics (09.12.2013)
Published in BMC genomics (09.12.2013)
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Journal Article
Convex Optimization, Shape Constraints, Compound Decisions, and Empirical Bayes Rules
Koenker, Roger, Mizera, Ivan
Published in Journal of the American Statistical Association (01.06.2014)
Published in Journal of the American Statistical Association (01.06.2014)
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Journal Article
NEW CRYPTOSYSTEM USING LINEAR COMBINATION OF FUNCTION AND SUMUDU TRANSFORM WITH PYTHON CODE
Raut, P.P, Hiwarekar, A.P
Published in TWMS journal of applied and engineering mathematics (01.01.2025)
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Published in TWMS journal of applied and engineering mathematics (01.01.2025)
Journal Article
Identifiability of nonparametric mixture models and Bayes optimal clustering
Published in The Annals of statistics
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Journal Article
Quantum advantage in variational Bayes inference
Miyahara, Hideyuki, Roychowdhury, Vwani
Published in Proceedings of the National Academy of Sciences - PNAS (01.08.2023)
Published in Proceedings of the National Academy of Sciences - PNAS (01.08.2023)
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Journal Article
Simultaneous inferences based on empirical Bayes methods and false discovery rates ineQTL data analysis
Chakraborty, Arindom, Jiang, Guanglong, Boustani, Malaz, Liu, Yunlong, Skaar, Todd, Li, Lang
Published in BMC genomics (09.12.2013)
Published in BMC genomics (09.12.2013)
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Journal Article