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MetPy: A Meteorological Python Library for Data Analysis and Visualization
May, Ryan M., Goebbert, Kevin H., Thielen, Jonathan E., Leeman, John R., Camron, M. Drew, Bruick, Zachary, Bruning, Eric C., Manser, Russell P., Arms, Sean C., Marsh, Patrick T.
Published in Bulletin of the American Meteorological Society (01.10.2022)
Published in Bulletin of the American Meteorological Society (01.10.2022)
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Journal Article
PyImageJ: A library for integrating ImageJ and Python
Rueden, Curtis T., Hiner, Mark C., Evans, Edward L., Pinkert, Michael A., Lucas, Alice M., Carpenter, Anne E., Cimini, Beth A., Eliceiri, Kevin W.
Published in Nature methods (01.11.2022)
Published in Nature methods (01.11.2022)
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Journal Article
Innovative UAV LiDAR Generated Point-Cloud Processing Algorithm in Python for Unsupervised Detection and Analysis of Agricultural Field-Plots
Polák, Michal, Miřijovský, Jakub, Hernándiz, Alba E., Špíšek, Zdeněk, Koprna, Radoslav, Humplík, Jan F.
Published in Remote sensing (Basel, Switzerland) (10.08.2021)
Published in Remote sensing (Basel, Switzerland) (10.08.2021)
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Journal Article
PyFLEXTRKR: a flexible feature tracking Python software for convective cloud analysis
Feng, Zhe, Hardin, Joseph, Barnes, Hannah C., Li, Jianfeng, Leung, L. Ruby, Varble, Adam, Zhang, Zhixiao
Published in Geoscientific Model Development (23.05.2023)
Published in Geoscientific Model Development (23.05.2023)
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Journal Article
2FAST2Q: a general-purpose sequence search and counting program for FASTQ files
Bravo, Afonso M., Typas, Athanasios, Veening, Jan-Willem
Published in PeerJ (San Francisco, CA) (25.10.2022)
Published in PeerJ (San Francisco, CA) (25.10.2022)
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Journal Article
PHOTONAI—A Python API for rapid machine learning model development
Leenings, Ramona, Winter, Nils Ralf, Plagwitz, Lucas, Holstein, Vincent, Ernsting, Jan, Sarink, Kelvin, Fisch, Lukas, Steenweg, Jakob, Kleine-Vennekate, Leon, Gebker, Julian, Emden, Daniel, Grotegerd, Dominik, Opel, Nils, Risse, Benjamin, Jiang, Xiaoyi, Dannlowski, Udo, Hahn, Tim
Published in PloS one (21.07.2021)
Published in PloS one (21.07.2021)
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Journal Article
COBRApy: COnstraints-Based Reconstruction and Analysis for Python
Ebrahim, Ali, Lerman, Joshua A, Palsson, Bernhard O, Hyduke, Daniel R
Published in BMC systems biology (08.08.2013)
Published in BMC systems biology (08.08.2013)
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Journal Article
SPOTting Model Parameters Using a Ready-Made Python Package
Houska, Tobias, Kraft, Philipp, Chamorro-Chavez, Alejandro, Breuer, Lutz
Published in PloS one (17.12.2015)
Published in PloS one (17.12.2015)
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Journal Article
cfr (v2024.1.26): a Python package for climate field reconstruction
Zhu, Feng, Emile-Geay, Julien, Hakim, Gregory J., Guillot, Dominique, Khider, Deborah, Tardif, Robert, Perkins, Walter A.
Published in Geoscientific Model Development (30.04.2024)
Published in Geoscientific Model Development (30.04.2024)
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Journal Article
Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article