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Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants
Pinto, Dalila, Darvishi, Katayoon, Shi, Xinghua, Rajan, Diana, Rigler, Diane, Fitzgerald, Tom, Lionel, Anath C, Thiruvahindrapuram, Bhooma, MacDonald, Jeffrey R, Mills, Ryan, Prasad, Aparna, Noonan, Kristin, Gribble, Susan, Prigmore, Elena, Donahoe, Patricia K, Smith, Richard S, Park, Ji Hyeon, Hurles, Matthew E, Carter, Nigel P, Lee, Charles, Scherer, Stephen W, Feuk, Lars
Published in Nature biotechnology (01.06.2011)
Published in Nature biotechnology (01.06.2011)
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Journal Article
Multi-qubit entanglement and algorithms on a neutral-atom quantum computer
Graham, T. M., Song, Y., Scott, J., Poole, C., Phuttitarn, L., Jooya, K., Eichler, P., Jiang, X., Marra, A., Grinkemeyer, B., Kwon, M., Ebert, M., Cherek, J., Lichtman, M. T., Gillette, M., Gilbert, J., Bowman, D., Ballance, T., Campbell, C., Dahl, E. D., Crawford, O., Blunt, N. S., Rogers, B., Noel, T., Saffman, M.
Published in Nature (London) (21.04.2022)
Published in Nature (London) (21.04.2022)
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Journal Article
European Pulsar Timing Array limits on continuous gravitational waves from individual supermassive black hole binaries
Babak, S., Petiteau, A., Sesana, A., Brem, P., Rosado, P. A., Taylor, S. R., Lassus, A., Hessels, J. W. T., Bassa, C. G., Burgay, M., Caballero, R. N., Champion, D. J., Cognard, I., Desvignes, G., Gair, J. R., Guillemot, L., Janssen, G. H., Karuppusamy, R., Kramer, M., Lazarus, P., Lee, K. J., Lentati, L., Liu, K., Mingarelli, C. M. F., Osłowski, S., Perrodin, D., Possenti, A., Purver, M. B., Sanidas, S., Smits, R., Stappers, B., Theureau, G., Tiburzi, C., van Haasteren, R., Vecchio, A., Verbiest, J. P. W.
Published in Monthly notices of the Royal Astronomical Society (11.01.2016)
Published in Monthly notices of the Royal Astronomical Society (11.01.2016)
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Journal Article
Placing limits on the stochastic gravitational-wave background using European Pulsar Timing Array data
van Haasteren, R., Levin, Y., Janssen, G. H., Lazaridis, K., Kramer, M., Stappers, B. W., Desvignes, G., Purver, M. B., Lyne, A. G., Ferdman, R. D., Jessner, A., Cognard, I., Theureau, G., D'Amico, N., Possenti, A., Burgay, M., Corongiu, A., Hessels, J. W. T., Smits, R., Verbiest, J. P. W.
Published in Monthly notices of the Royal Astronomical Society (11.07.2011)
Published in Monthly notices of the Royal Astronomical Society (11.07.2011)
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Journal Article
FLOW-MAP: a graph-based, force-directed layout algorithm for trajectory mapping in single-cell time course datasets
Ko, Melissa E., Williams, Corey M., Fread, Kristen I., Goggin, Sarah M., Rustagi, Rohit S., Fragiadakis, Gabriela K., Nolan, Garry P., Zunder, Eli R.
Published in Nature protocols (01.02.2020)
Published in Nature protocols (01.02.2020)
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Journal Article
A high-performance neural prosthesis enabled by control algorithm design
Gilja, Vikash, Nuyujukian, Paul, Chestek, Cindy A, Cunningham, John P, Yu, Byron M, Fan, Joline M, Churchland, Mark M, Kaufman, Matthew T, Kao, Jonathan C, Ryu, Stephen I, Shenoy, Krishna V
Published in Nature neuroscience (01.12.2012)
Published in Nature neuroscience (01.12.2012)
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Journal Article
Acoustic monitoring in terrestrial environments using microphone arrays: applications, technological considerations and prospectus
Blumstein, Daniel T., Mennill, Daniel J., Clemins, Patrick, Girod, Lewis, Yao, Kung, Patricelli, Gail, Deppe, Jill L., Krakauer, Alan H., Clark, Christopher, Cortopassi, Kathryn A., Hanser, Sean F., McCowan, Brenda, Ali, Andreas M., Kirschel, Alexander N. G.
Published in The Journal of applied ecology (01.06.2011)
Published in The Journal of applied ecology (01.06.2011)
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Journal Article
A community effort to assess and improve drug sensitivity prediction algorithms
Costello, James C, Heiser, Laura M, Georgii, Elisabeth, Gönen, Mehmet, Menden, Michael P, Wang, Nicholas J, Bansal, Mukesh, Ammad-ud-din, Muhammad, Hintsanen, Petteri, Khan, Suleiman A, Mpindi, John-Patrick, Kallioniemi, Olli, Honkela, Antti, Aittokallio, Tero, Wennerberg, Krister, Collins, James J, Gallahan, Dan, Singer, Dinah, Saez-Rodriguez, Julio, Kaski, Samuel, Gray, Joe W, Stolovitzky, Gustavo
Published in Nature biotechnology (01.12.2014)
Published in Nature biotechnology (01.12.2014)
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Journal Article
Preoperative Diagnosis of Benign Thyroid Nodules with Indeterminate Cytology
Alexander, Erik K, Kennedy, Giulia C, Baloch, Zubair W, Cibas, Edmund S, Chudova, Darya, Diggans, James, Friedman, Lyssa, Kloos, Richard T, LiVolsi, Virginia A, Mandel, Susan J, Raab, Stephen S, Rosai, Juan, Steward, David L, Walsh, P. Sean, Wilde, Jonathan I, Zeiger, Martha A, Lanman, Richard B, Haugen, Bryan R
Published in The New England journal of medicine (23.08.2012)
Published in The New England journal of medicine (23.08.2012)
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Journal Article
Quantum annealing with manufactured spins
Johnson, M. W., Amin, M. H. S., Gildert, S., Lanting, T., Hamze, F., Dickson, N., Harris, R., Berkley, A. J., Johansson, J., Bunyk, P., Chapple, E. M., Enderud, C., Hilton, J. P., Karimi, K., Ladizinsky, E., Ladizinsky, N., Oh, T., Perminov, I., Rich, C., Thom, M. C., Tolkacheva, E., Truncik, C. J. S., Uchaikin, S., Wang, J., Wilson, B., Rose, G.
Published in Nature (London) (12.05.2011)
Published in Nature (London) (12.05.2011)
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Journal Article
High-throughput phenotyping with electronic medical record data using a common semi-supervised approach (PheCAP)
Zhang, Yichi, Cai, Tianrun, Yu, Sheng, Cho, Kelly, Hong, Chuan, Sun, Jiehuan, Huang, Jie, Ho, Yuk-Lam, Ananthakrishnan, Ashwin N., Xia, Zongqi, Shaw, Stanley Y., Gainer, Vivian, Castro, Victor, Link, Nicholas, Honerlaw, Jacqueline, Huang, Sicong, Gagnon, David, Karlson, Elizabeth W., Plenge, Robert M., Szolovits, Peter, Savova, Guergana, Churchill, Susanne, O’Donnell, Christopher, Murphy, Shawn N., Gaziano, J. Michael, Kohane, Isaac, Cai, Tianxi, Liao, Katherine P.
Published in Nature protocols (01.12.2019)
Published in Nature protocols (01.12.2019)
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Journal Article
Development of a Novel, Low-Power, Ultrasound Algorithm for the Detection of Pneumothorax Using a Large Animal Model
Schauer, Steven G, Hunter, Kendall S, Maddry, Joseph K, April, Michael D, Mancha, Fabiola, Martinez, Melody A, Mendez, Jessica, Sifuentes, Dayana, Shandas, Robin, Chin, Eric
Published in Military medicine (28.08.2025)
Published in Military medicine (28.08.2025)
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Journal Article
Stochastic‐offset‐enhanced restricted slice excitation and 180° refocusing designs with spatially non‐linear ΔB0 shim array fields
Zhang, Molin, Arango, Nicolas, Yamin Arefeen, Guryev, Georgy, Stockmann, Jason P, White, Jacob, Adalsteinsson, Elfar
Published in Magnetic resonance in medicine (01.12.2023)
Published in Magnetic resonance in medicine (01.12.2023)
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Journal Article
Detectable Changes in The Blood Transcriptome Are Present after Two Weeks of Antituberculosis Therapy
Bloom, Chloe I., Graham, Christine M., Berry, Matthew P. R., Wilkinson, Katalin A., Oni, Tolu, Rozakeas, Fotini, Xu, Zhaohui, Rossello-Urgell, Jose, Chaussabel, Damien, Banchereau, Jacques, Pascual, Virginia, Lipman, Marc, Wilkinson, Robert J., O’Garra, Anne
Published in PloS one (02.10.2012)
Published in PloS one (02.10.2012)
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Journal Article
Discovery of common Asian copy number variants using integrated high-resolution array CGH and massively parallel DNA sequencing
Park, Hansoo, Kim, Jong-Il, Ju, Young Seok, Gokcumen, Omer, Mills, Ryan E, Kim, Sheehyun, Lee, Seungbok, Suh, Dongwhan, Hong, Dongwan, Kang, Hyunseok Peter, Yoo, Yun Joo, Shin, Jong-Yeon, Kim, Hyun-Jin, Yavartanoo, Maryam, Chang, Young Wha, Ha, Jung-Sook, Chong, Wilson, Hwang, Ga-Ram, Darvishi, Katayoon, Kim, HyeRan, Yang, Song Ju, Yang, Kap-Seok, Kim, Hyungtae, Hurles, Matthew E, Scherer, Stephen W, Carter, Nigel P, Tyler-Smith, Chris, Lee, Charles, Seo, Jeong-Sun
Published in Nature genetics (01.05.2010)
Published in Nature genetics (01.05.2010)
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Journal Article
Parallelized computational 3D video microscopy of freely moving organisms at multiple gigapixels per second
Zhou, Kevin C., Harfouche, Mark, Cooke, Colin L., Park, Jaehee, Konda, Pavan C., Kreiss, Lucas, Kim, Kanghyun, Jönsson, Joakim, Doman, Thomas, Reamey, Paul, Saliu, Veton, Cook, Clare B., Zheng, Maxwell, Bechtel, John P., Bègue, Aurélien, McCarroll, Matthew, Bagwell, Jennifer, Horstmeyer, Gregor, Bagnat, Michel, Horstmeyer, Roarke
Published in Nature photonics (01.05.2023)
Published in Nature photonics (01.05.2023)
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Journal Article
A Meta-Analysis of Retinoblastoma Copy Numbers Refines the List of Possible Driver Genes Involved in Tumor Progression
Kooi, Irsan E., Mol, Berber M., Massink, Maarten P. G., de Jong, Marcus C., de Graaf, Pim, van der Valk, Paul, Meijers-Heijboer, Hanne, Kaspers, Gertjan J. L., Moll, Annette C., te Riele, Hein, Cloos, Jacqueline, Dorsman, Josephine C.
Published in PloS one (26.04.2016)
Published in PloS one (26.04.2016)
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