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Methods to Develop an Electronic Medical Record Phenotype Algorithm to Compare the Risk of Coronary Artery Disease across 3 Chronic Disease Cohorts
Liao, Katherine P., Ananthakrishnan, Ashwin N., Kumar, Vishesh, Xia, Zongqi, Cagan, Andrew, Gainer, Vivian S., Goryachev, Sergey, Chen, Pei, Savova, Guergana K., Agniel, Denis, Churchill, Susanne, Lee, Jaeyoung, Murphy, Shawn N., Plenge, Robert M., Szolovits, Peter, Kohane, Isaac, Shaw, Stanley Y., Karlson, Elizabeth W., Cai, Tianxi
Published in PloS one (24.08.2015)
Published in PloS one (24.08.2015)
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Journal Article
Palladium-based mass tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm
Zunder, Eli R, Finck, Rachel, Behbehani, Gregory K, Amir, El-ad D, Krishnaswamy, Smita, Gonzalez, Veronica D, Lorang, Cynthia G, Bjornson, Zach, Spitzer, Matthew H, Bodenmiller, Bernd, Fantl, Wendy J, Pe'er, Dana, Nolan, Garry P
Published in Nature protocols (01.02.2015)
Published in Nature protocols (01.02.2015)
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Journal Article
Derivation of a natural language processing algorithm to identify febrile infants
Yaeger, Jeffrey P., Lu, Jiahao, Jones, Jeremiah, Ertefaie, Ashkan, Fiscella, Kevin, Gildea, Daniel
Published in Journal of hospital medicine (01.01.2022)
Published in Journal of hospital medicine (01.01.2022)
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Journal Article
Identification of pregnancies and their outcomes in healthcare claims data, 2008–2019: An algorithm
Ailes, Elizabeth C., Zhu, Weiming, Clark, Elizabeth A., Huang, Ya-lin A., Lampe, Margaret A., Kourtis, Athena P., Reefhuis, Jennita, Hoover, Karen W.
Published in PloS one (24.04.2023)
Published in PloS one (24.04.2023)
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Journal Article
Identifying lupus patients in electronic health records: Development and validation of machine learning algorithms and application of rule-based algorithms
Jorge, April, Castro, Victor M., Barnado, April, Gainer, Vivian, Hong, Chuan, Cai, Tianxi, Cai, Tianrun, Carroll, Robert, Denny, Joshua C., Crofford, Leslie, Costenbader, Karen H., Liao, Katherine P., Karlson, Elizabeth W., Feldman, Candace H.
Published in Seminars in arthritis and rheumatism (01.08.2019)
Published in Seminars in arthritis and rheumatism (01.08.2019)
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Journal Article
Portability of an algorithm to identify rheumatoid arthritis in electronic health records
Carroll, Robert J, Thompson, Will K, Eyler, Anne E, Mandelin, Arthur M, Cai, Tianxi, Zink, Raquel M, Pacheco, Jennifer A, Boomershine, Chad S, Lasko, Thomas A, Xu, Hua, Karlson, Elizabeth W, Perez, Raul G, Gainer, Vivian S, Murphy, Shawn N, Ruderman, Eric M, Pope, Richard M, Plenge, Robert M, Kho, Abel Ngo, Liao, Katherine P, Denny, Joshua C
Published in Journal of the American Medical Informatics Association : JAMIA (01.06.2012)
Published in Journal of the American Medical Informatics Association : JAMIA (01.06.2012)
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Journal Article
FLOW-MAP: a graph-based, force-directed layout algorithm for trajectory mapping in single-cell time course datasets
Ko, Melissa E., Williams, Corey M., Fread, Kristen I., Goggin, Sarah M., Rustagi, Rohit S., Fragiadakis, Gabriela K., Nolan, Garry P., Zunder, Eli R.
Published in Nature protocols (01.02.2020)
Published in Nature protocols (01.02.2020)
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Journal Article
Structural, spectroscopic aspects, and electronic properties of (TiO2)n clusters: A study based on the use of natural algorithms in association with quantum chemical methods
Ganguly Neogi, Soumya, Chaudhury, Pinaki
Published in Journal of computational chemistry (05.01.2014)
Published in Journal of computational chemistry (05.01.2014)
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Journal Article
Bayesian reaction optimization as a tool for chemical synthesis
Shields, Benjamin J., Stevens, Jason, Li, Jun, Parasram, Marvin, Damani, Farhan, Alvarado, Jesus I. Martinez, Janey, Jacob M., Adams, Ryan P., Doyle, Abigail G.
Published in Nature (London) (04.02.2021)
Published in Nature (London) (04.02.2021)
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Journal Article
Development and validation of a trans-ancestry polygenic risk score for type 2 diabetes in diverse populations
Ge, Tian, Irvin, Marguerite R., Patki, Amit, Srinivasasainagendra, Vinodh, Lin, Yen-Feng, Tiwari, Hemant K., Armstrong, Nicole D., Benoit, Barbara, Chen, Chia-Yen, Choi, Karmel W., Cimino, James J., Davis, Brittney H., Dikilitas, Ozan, Etheridge, Bethany, Feng, Yen-Chen Anne, Gainer, Vivian, Huang, Hailiang, Jarvik, Gail P., Kachulis, Christopher, Kenny, Eimear E., Khan, Atlas, Kiryluk, Krzysztof, Kottyan, Leah, Kullo, Iftikhar J., Lange, Christoph, Lennon, Niall, Leong, Aaron, Malolepsza, Edyta, Miles, Ayme D., Murphy, Shawn, Namjou, Bahram, Narayan, Renuka, O’Connor, Mark J., Pacheco, Jennifer A., Perez, Emma, Rasmussen-Torvik, Laura J., Rosenthal, Elisabeth A., Schaid, Daniel, Stamou, Maria, Udler, Miriam S., Wei, Wei-Qi, Weiss, Scott T., Ng, Maggie C. Y., Smoller, Jordan W., Lebo, Matthew S., Meigs, James B., Limdi, Nita A., Karlson, Elizabeth W.
Published in Genome medicine (29.06.2022)
Published in Genome medicine (29.06.2022)
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Journal Article
High-throughput phenotyping with electronic medical record data using a common semi-supervised approach (PheCAP)
Zhang, Yichi, Cai, Tianrun, Yu, Sheng, Cho, Kelly, Hong, Chuan, Sun, Jiehuan, Huang, Jie, Ho, Yuk-Lam, Ananthakrishnan, Ashwin N., Xia, Zongqi, Shaw, Stanley Y., Gainer, Vivian, Castro, Victor, Link, Nicholas, Honerlaw, Jacqueline, Huang, Sicong, Gagnon, David, Karlson, Elizabeth W., Plenge, Robert M., Szolovits, Peter, Savova, Guergana, Churchill, Susanne, O’Donnell, Christopher, Murphy, Shawn N., Gaziano, J. Michael, Kohane, Isaac, Cai, Tianxi, Liao, Katherine P.
Published in Nature protocols (01.12.2019)
Published in Nature protocols (01.12.2019)
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Journal Article
Automated Algorithm for J-Tpeak and Tpeak-Tend Assessment of Drug-Induced Proarrhythmia Risk
Johannesen, Lars, Vicente, Jose, Hosseini, Meisam, Strauss, David G.
Published in PloS one (30.12.2016)
Published in PloS one (30.12.2016)
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Journal Article
Improving Case Definition of Crohnʼs Disease and Ulcerative Colitis in Electronic Medical Records Using Natural Language Processing: A Novel Informatics Approach
Ananthakrishnan, Ashwin N., Cai, Tianxi, Savova, Guergana, Cheng, Su-Chun, Chen, Pei, Perez, Raul Guzman, Gainer, Vivian S., Murphy, Shawn N., Szolovits, Peter, Xia, Zongqi, Shaw, Stanley, Churchill, Susanne, Karlson, Elizabeth W., Kohane, Isaac, Plenge, Robert M., Liao, Katherine P.
Published in Inflammatory bowel diseases (01.06.2013)
Published in Inflammatory bowel diseases (01.06.2013)
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Journal Article
Statistical inference for natural language processing algorithms when predicting type 2 diabetes using electronic health record notes
Egleston, Brian L., Bai, Tian, Bleicher, Richard J., Taylor, Stanford J., Lutz, Michael H., Vucetic, Slobodan
Published in Biometrics (03.08.2020)
Published in Biometrics (03.08.2020)
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Journal Article
Development and validation of algorithms to build an electronic health record based cohort of patients with systemic sclerosis
Tukpah, Ann-Marcia C., Rose, Jonathan A., Seger, Diane L., Dellaripa, Paul F., Hunninghake, Gary M., Bates, David W.
Published in PloS one (13.04.2023)
Published in PloS one (13.04.2023)
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Journal Article
Use of natural language processing in electronic medical records to identify pregnant women with suicidal behavior: towards a solution to the complex classification problem
Zhong, Qiu-Yue, Mittal, Leena P., Nathan, Margo D., Brown, Kara M., González, Deborah Knudson, Cai, Tianrun, Finan, Sean, Gelaye, Bizu, Avillach, Paul, Smoller, Jordan W., Karlson, Elizabeth W., Cai, Tianxi, Williams, Michelle A.
Published in European journal of epidemiology (01.02.2019)
Published in European journal of epidemiology (01.02.2019)
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Journal Article