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Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants
Pinto, Dalila, Darvishi, Katayoon, Shi, Xinghua, Rajan, Diana, Rigler, Diane, Fitzgerald, Tom, Lionel, Anath C, Thiruvahindrapuram, Bhooma, MacDonald, Jeffrey R, Mills, Ryan, Prasad, Aparna, Noonan, Kristin, Gribble, Susan, Prigmore, Elena, Donahoe, Patricia K, Smith, Richard S, Park, Ji Hyeon, Hurles, Matthew E, Carter, Nigel P, Lee, Charles, Scherer, Stephen W, Feuk, Lars
Published in Nature biotechnology (01.06.2011)
Published in Nature biotechnology (01.06.2011)
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Journal Article
Placing limits on the stochastic gravitational-wave background using European Pulsar Timing Array data
van Haasteren, R., Levin, Y., Janssen, G. H., Lazaridis, K., Kramer, M., Stappers, B. W., Desvignes, G., Purver, M. B., Lyne, A. G., Ferdman, R. D., Jessner, A., Cognard, I., Theureau, G., D'Amico, N., Possenti, A., Burgay, M., Corongiu, A., Hessels, J. W. T., Smits, R., Verbiest, J. P. W.
Published in Monthly notices of the Royal Astronomical Society (11.07.2011)
Published in Monthly notices of the Royal Astronomical Society (11.07.2011)
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Journal Article
Acoustic monitoring in terrestrial environments using microphone arrays: applications, technological considerations and prospectus
Blumstein, Daniel T., Mennill, Daniel J., Clemins, Patrick, Girod, Lewis, Yao, Kung, Patricelli, Gail, Deppe, Jill L., Krakauer, Alan H., Clark, Christopher, Cortopassi, Kathryn A., Hanser, Sean F., McCowan, Brenda, Ali, Andreas M., Kirschel, Alexander N. G.
Published in The Journal of applied ecology (01.06.2011)
Published in The Journal of applied ecology (01.06.2011)
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Journal Article
Preoperative Diagnosis of Benign Thyroid Nodules with Indeterminate Cytology
Alexander, Erik K, Kennedy, Giulia C, Baloch, Zubair W, Cibas, Edmund S, Chudova, Darya, Diggans, James, Friedman, Lyssa, Kloos, Richard T, LiVolsi, Virginia A, Mandel, Susan J, Raab, Stephen S, Rosai, Juan, Steward, David L, Walsh, P. Sean, Wilde, Jonathan I, Zeiger, Martha A, Lanman, Richard B, Haugen, Bryan R
Published in The New England journal of medicine (23.08.2012)
Published in The New England journal of medicine (23.08.2012)
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Journal Article
Quantum annealing with manufactured spins
Johnson, M. W., Amin, M. H. S., Gildert, S., Lanting, T., Hamze, F., Dickson, N., Harris, R., Berkley, A. J., Johansson, J., Bunyk, P., Chapple, E. M., Enderud, C., Hilton, J. P., Karimi, K., Ladizinsky, E., Ladizinsky, N., Oh, T., Perminov, I., Rich, C., Thom, M. C., Tolkacheva, E., Truncik, C. J. S., Uchaikin, S., Wang, J., Wilson, B., Rose, G.
Published in Nature (London) (12.05.2011)
Published in Nature (London) (12.05.2011)
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Journal Article
FLOW-MAP: a graph-based, force-directed layout algorithm for trajectory mapping in single-cell time course datasets
Ko, Melissa E., Williams, Corey M., Fread, Kristen I., Goggin, Sarah M., Rustagi, Rohit S., Fragiadakis, Gabriela K., Nolan, Garry P., Zunder, Eli R.
Published in Nature protocols (01.02.2020)
Published in Nature protocols (01.02.2020)
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Journal Article
A high-performance neural prosthesis enabled by control algorithm design
Gilja, Vikash, Nuyujukian, Paul, Chestek, Cindy A, Cunningham, John P, Yu, Byron M, Fan, Joline M, Churchland, Mark M, Kaufman, Matthew T, Kao, Jonathan C, Ryu, Stephen I, Shenoy, Krishna V
Published in Nature neuroscience (01.12.2012)
Published in Nature neuroscience (01.12.2012)
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Journal Article
High-throughput phenotyping with electronic medical record data using a common semi-supervised approach (PheCAP)
Zhang, Yichi, Cai, Tianrun, Yu, Sheng, Cho, Kelly, Hong, Chuan, Sun, Jiehuan, Huang, Jie, Ho, Yuk-Lam, Ananthakrishnan, Ashwin N., Xia, Zongqi, Shaw, Stanley Y., Gainer, Vivian, Castro, Victor, Link, Nicholas, Honerlaw, Jacqueline, Huang, Sicong, Gagnon, David, Karlson, Elizabeth W., Plenge, Robert M., Szolovits, Peter, Savova, Guergana, Churchill, Susanne, O’Donnell, Christopher, Murphy, Shawn N., Gaziano, J. Michael, Kohane, Isaac, Cai, Tianxi, Liao, Katherine P.
Published in Nature protocols (01.12.2019)
Published in Nature protocols (01.12.2019)
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Journal Article
Identification of Pou5f1, Sox2, and Nanog downstream target genes with statistical confidence by applying a novel algorithm to time course microarray and genome-wide chromatin immunoprecipitation data
Sharov, Alexei A, Masui, Shinji, Sharova, Lioudmila V, Piao, Yulan, Aiba, Kazuhiro, Matoba, Ryo, Xin, Li, Niwa, Hitoshi, Ko, Minoru SH
Published in BMC genomics (03.06.2008)
Published in BMC genomics (03.06.2008)
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Journal Article
Development of a Novel, Low-Power, Ultrasound Algorithm for the Detection of Pneumothorax Using a Large Animal Model
Schauer, Steven G, Hunter, Kendall S, Maddry, Joseph K, April, Michael D, Mancha, Fabiola, Martinez, Melody A, Mendez, Jessica, Sifuentes, Dayana, Shandas, Robin, Chin, Eric
Published in Military medicine (28.08.2025)
Published in Military medicine (28.08.2025)
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Journal Article
Stochastic‐offset‐enhanced restricted slice excitation and 180° refocusing designs with spatially non‐linear ΔB0 shim array fields
Zhang, Molin, Arango, Nicolas, Yamin Arefeen, Guryev, Georgy, Stockmann, Jason P, White, Jacob, Adalsteinsson, Elfar
Published in Magnetic resonance in medicine (01.12.2023)
Published in Magnetic resonance in medicine (01.12.2023)
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Journal Article
Detectable Changes in The Blood Transcriptome Are Present after Two Weeks of Antituberculosis Therapy
Bloom, Chloe I., Graham, Christine M., Berry, Matthew P. R., Wilkinson, Katalin A., Oni, Tolu, Rozakeas, Fotini, Xu, Zhaohui, Rossello-Urgell, Jose, Chaussabel, Damien, Banchereau, Jacques, Pascual, Virginia, Lipman, Marc, Wilkinson, Robert J., O’Garra, Anne
Published in PloS one (02.10.2012)
Published in PloS one (02.10.2012)
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Journal Article
Integrated Genetic and Epigenetic Analysis Identifies Haplotype-Specific Methylation in the FTO Type 2 Diabetes and Obesity Susceptibility Locus
Bell, Christopher G., Finer, Sarah, Lindgren, Cecilia M., Wilson, Gareth A., Rakyan, Vardhman K., Teschendorff, Andrew E., Akan, Pelin, Stupka, Elia, Down, Thomas A., Prokopenko, Inga, Morison, Ian M., Mill, Jonathan, Pidsley, Ruth, Deloukas, Panos, Frayling, Timothy M., Hattersley, Andrew T., McCarthy, Mark I., Beck, Stephan, Hitman, Graham A.
Published in PloS one (18.11.2010)
Published in PloS one (18.11.2010)
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Journal Article
Discovery of common Asian copy number variants using integrated high-resolution array CGH and massively parallel DNA sequencing
Park, Hansoo, Kim, Jong-Il, Ju, Young Seok, Gokcumen, Omer, Mills, Ryan E, Kim, Sheehyun, Lee, Seungbok, Suh, Dongwhan, Hong, Dongwan, Kang, Hyunseok Peter, Yoo, Yun Joo, Shin, Jong-Yeon, Kim, Hyun-Jin, Yavartanoo, Maryam, Chang, Young Wha, Ha, Jung-Sook, Chong, Wilson, Hwang, Ga-Ram, Darvishi, Katayoon, Kim, HyeRan, Yang, Song Ju, Yang, Kap-Seok, Kim, Hyungtae, Hurles, Matthew E, Scherer, Stephen W, Carter, Nigel P, Tyler-Smith, Chris, Lee, Charles, Seo, Jeong-Sun
Published in Nature genetics (01.05.2010)
Published in Nature genetics (01.05.2010)
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Journal Article
Design of a Bovine Low-Density SNP Array Optimized for Imputation
Boichard, Didier, Chung, Hoyoung, Dassonneville, Romain, David, Xavier, Eggen, André, Fritz, Sébastien, Gietzen, Kimberly J., Hayes, Ben J., Lawley, Cynthia T., Sonstegard, Tad S., Van Tassell, Curtis P., VanRaden, Paul M., Viaud-Martinez, Karine A., Wiggans, George R.
Published in PloS one (28.03.2012)
Published in PloS one (28.03.2012)
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Journal Article
Detection of multiple metal ions in water with a fluorescence sensor based on carbon quantum dots assisted by stepwise prediction and machine learning
Liu, Yuying, Chen, Jiao, Xu, Zijun, Liu, Hao, Yuan, Tingting, Wang, Xiyuan, Wei, Jianjie, Shi, Qingdong
Published in Environmental chemistry letters (01.12.2022)
Published in Environmental chemistry letters (01.12.2022)
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Journal Article
Microarray analysis of microrna expression in peripheral blood mononuclear cells of patients with polymyositis and dermatomyositis
Shi, Jia, Zhou, Shuang, Zhao, Jiuliang, Xu, Dong, Huang, Hui, Li, Mengtao, Tian, Xinping, He, Linrong, Wu, Chanyuan, Wang, Qian, Zhao, Yan, Zeng, Xiaofeng
Published in Journal of translational internal medicine (01.04.2024)
Published in Journal of translational internal medicine (01.04.2024)
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Journal Article
Parallelized computational 3D video microscopy of freely moving organisms at multiple gigapixels per second
Zhou, Kevin C., Harfouche, Mark, Cooke, Colin L., Park, Jaehee, Konda, Pavan C., Kreiss, Lucas, Kim, Kanghyun, Jönsson, Joakim, Doman, Thomas, Reamey, Paul, Saliu, Veton, Cook, Clare B., Zheng, Maxwell, Bechtel, John P., Bègue, Aurélien, McCarroll, Matthew, Bagwell, Jennifer, Horstmeyer, Gregor, Bagnat, Michel, Horstmeyer, Roarke
Published in Nature photonics (01.05.2023)
Published in Nature photonics (01.05.2023)
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Journal Article