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    pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods
                                      
                                            Behdenna, Abdelkader,                              Colange, Maximilien,                              Haziza, Julien,                              Gema, Aryo,                              Appé, Guillaume,                              Azencott, Chloé-Agathe,                              Nordor, Akpéli                              
Published in BMC bioinformatics (07.12.2023)
                   
      
      
                                                  Published in BMC bioinformatics (07.12.2023)
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          Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
                                      
                                            Johnson, Jeanette A. I.,                              Tsang, Ashley P.,                              Mitchell, Jacob T.,                              Zhou, David L.,                              Bowden, Julia,                              Davis-Marcisak, Emily,                              Sherman, Thomas,                              Liefeld, Ted,                              Loth, Melanie,                              Goff, Loyal A.,                              Zimmerman, Jacquelyn W.,                              Kinny-Köster, Ben,                              Jaffee, Elizabeth M.,                              Tamayo, Pablo,                              Mesirov, Jill P.,                              Reich, Michael,                              Fertig, Elana J.,                              Stein-O’Brien, Genevieve L.                              
Published in Nature protocols (01.12.2023)
                   
      
      
                                                  Published in Nature protocols (01.12.2023)
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          Development and evaluation of GIS-based runoff and sediment yield watershed scale model
                                      
                                            Yousuf, Abrar,                              Bhardwaj, Anil,                              Yousuf, Faizaan                              
Published in Arabian journal of geosciences (01.10.2022)
                   
      
      
                                                  Published in Arabian journal of geosciences (01.10.2022)
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          Image processing for electron microscopy single-particle analysis using XMIPP
                                      
                                            Scheres, Sjors H W,                              Núñez-Ramírez, Rafael,                              Sorzano, Carlos O S,                              Carazo, José María,                              Marabini, Roberto                              
Published in Nature protocols (01.06.2008)
                   
      
      
                                                  Published in Nature protocols (01.06.2008)
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          Colonyzer: automated quantification of micro-organism growth characteristics on solid agar
                                      
                                            Lawless, Conor,                              Wilkinson, Darren J,                              Young, Alexander,                              Addinall, Stephen G,                              Lydall, David A                              
Published in BMC bioinformatics (28.05.2010)
                   
      
      
                                                  Published in BMC bioinformatics (28.05.2010)
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          Online bias-aware disease module mining with ROBUST-Web
                                      
                                            Sarkar, Suryadipto,                              Lucchetta, Marta,                              Maier, Andreas,                              Abdrabbou, Mohamed M,                              Baumbach, Jan,                              List, Markus,                              Schaefer, Martin H,                              Blumenthal, David B                              
Published in Bioinformatics (Oxford, England) (01.06.2023)
                   
      
      
                                                  Published in Bioinformatics (Oxford, England) (01.06.2023)
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          Toward a unified framework for interpreting machine-learning models in neuroimaging
                                      
                                            Kohoutová, Lada,                              Heo, Juyeon,                              Cha, Sungmin,                              Lee, Sungwoo,                              Moon, Taesup,                              Wager, Tor D.,                              Woo, Choong-Wan                              
Published in Nature protocols (01.04.2020)
                   
      
      
                                                  Published in Nature protocols (01.04.2020)
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          Simulated annealing aided genetic algorithm for gene selection from microarray data
                                      
                                            Marjit, Shyam,                              Bhattacharyya, Trinav,                              Chatterjee, Bitanu,                              Sarkar, Ram                              
Published in Computers in biology and medicine (01.05.2023)
                   
      
      
                                                  Published in Computers in biology and medicine (01.05.2023)
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