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BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data
Lachance, Jean-Christophe, Lloyd, Colton J., Monk, Jonathan M., Yang, Laurence, Sastry, Anand V., Seif, Yara, Palsson, Bernhard O., Rodrigue, Sébastien, Feist, Adam M., King, Zachary A., Jacques, Pierre-Étienne
Published in PLoS computational biology (01.04.2019)
Published in PLoS computational biology (01.04.2019)
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Journal Article
Value trace problems with assisting references for Python programming self-study
Hay Mar Shwe, San Hay Mar, Funabiki, Nobuo, Syaifudin, Yan Watequlis, Tar, Phyu Phyu, Kyaw, Htoo Htoo Sandi, Thant, Hnin Aye, Kao, Wen-Chung, Min, Nandar Win, Myint, Thandar, Htet, Ei Ei
Published in International journal of Web information systems (06.09.2021)
Published in International journal of Web information systems (06.09.2021)
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Journal Article
Brian2CUDA: Flexible and Efficient Simulation of Spiking Neural Network Models on GPUs
Alevi, Denis, Stimberg, Marcel, Sprekeler, Henning, Obermayer, Klaus, Augustin, Moritz
Published in Frontiers in neuroinformatics (31.10.2022)
Published in Frontiers in neuroinformatics (31.10.2022)
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Journal Article
TRAIT2D: a Software for Quantitative Analysis of Single Particle Diffusion Data [version 2; peer review: 2 approved]
Reina, Francesco, Wigg, John M.A, Dmitrieva, Mariia, Vogler, Bela, Lefebvre, Joël, Rittscher, Jens, Eggeling, Christian
Published in F1000 research (2022)
Published in F1000 research (2022)
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Journal Article
Integrating Hi-C links with assembly graphs for chromosome-scale assembly
Ghurye, Jay, Rhie, Arang, Walenz, Brian P., Schmitt, Anthony, Selvaraj, Siddarth, Pop, Mihai, Phillippy, Adam M., Koren, Sergey
Published in PLoS computational biology (01.08.2019)
Published in PLoS computational biology (01.08.2019)
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Journal Article
Data mining techniques on astronomical spectra data – II. Classification analysis
Yang, Haifeng, Zhou, Lichan, Cai, Jianghui, Shi, Chenhui, Yang, Yuqing, Zhao, Xujun, Duan, Juncheng, Yin, Xiaona
Published in Monthly notices of the Royal Astronomical Society (01.02.2023)
Published in Monthly notices of the Royal Astronomical Society (01.02.2023)
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Journal Article
SciPy 1.0: fundamental algorithms for scientific computing in Python
Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul
Published in Nature methods (01.03.2020)
Published in Nature methods (01.03.2020)
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Journal Article
MetaLAFFA: a flexible, end-to-end, distributed computing-compatible metagenomic functional annotation pipeline
Eng, Alexander, Verster, Adrian J., Borenstein, Elhanan
Published in BMC bioinformatics (21.10.2020)
Published in BMC bioinformatics (21.10.2020)
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Journal Article
MetPy: A Meteorological Python Library for Data Analysis and Visualization
May, Ryan M., Goebbert, Kevin H., Thielen, Jonathan E., Leeman, John R., Camron, M. Drew, Bruick, Zachary, Bruning, Eric C., Manser, Russell P., Arms, Sean C., Marsh, Patrick T.
Published in Bulletin of the American Meteorological Society (01.10.2022)
Published in Bulletin of the American Meteorological Society (01.10.2022)
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Journal Article