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SciPy 1.0: fundamental algorithms for scientific computing in Python
Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul
Published in Nature methods (01.03.2020)
Published in Nature methods (01.03.2020)
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Journal Article
MetPy: A Meteorological Python Library for Data Analysis and Visualization
May, Ryan M., Goebbert, Kevin H., Thielen, Jonathan E., Leeman, John R., Camron, M. Drew, Bruick, Zachary, Bruning, Eric C., Manser, Russell P., Arms, Sean C., Marsh, Patrick T.
Published in Bulletin of the American Meteorological Society (01.10.2022)
Published in Bulletin of the American Meteorological Society (01.10.2022)
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Journal Article
ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data
Kieser, Silas, Brown, Joseph, Zdobnov, Evgeny M., Trajkovski, Mirko, McCue, Lee Ann
Published in BMC bioinformatics (22.06.2020)
Published in BMC bioinformatics (22.06.2020)
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Journal Article
COBRApy: COnstraints-Based Reconstruction and Analysis for Python
Ebrahim, Ali, Lerman, Joshua A, Palsson, Bernhard O, Hyduke, Daniel R
Published in BMC systems biology (08.08.2013)
Published in BMC systems biology (08.08.2013)
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Journal Article
Value trace problems with assisting references for Python programming self-study
Hay Mar Shwe, San Hay Mar, Funabiki, Nobuo, Syaifudin, Yan Watequlis, Tar, Phyu Phyu, Kyaw, Htoo Htoo Sandi, Thant, Hnin Aye, Kao, Wen-Chung, Min, Nandar Win, Myint, Thandar, Htet, Ei Ei
Published in International journal of Web information systems (06.09.2021)
Published in International journal of Web information systems (06.09.2021)
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Journal Article
Bioinformatic pipelines in Python with Leaf
Napolitano, Francesco, Mariani-Costantini, Renato, Tagliaferri, Roberto
Published in BMC bioinformatics (21.06.2013)
Published in BMC bioinformatics (21.06.2013)
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Journal Article
PODPAC: open-source Python software for enabling harmonized, plug-and-play processing of disparate earth observation data sets and seamless transition onto the serverless cloud by earth scientists
Ueckermann, Mattheus P., Bieszczad, Jerry, Entekhabi, Dara, Shapiro, Marc L., Callendar, David R., Sullivan, David, Milloy, Jeffrey
Published in Earth science informatics (01.12.2020)
Published in Earth science informatics (01.12.2020)
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Journal Article
Accessing the SEED Genome Databases via Web Services API: Tools for Programmers
Disz, Terry, Akhter, Sajia, Cuevas, Daniel, Olson, Robert, Overbeek, Ross, Vonstein, Veronika, Stevens, Rick, Edwards, Robert A
Published in BMC bioinformatics (14.06.2010)
Published in BMC bioinformatics (14.06.2010)
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Journal Article
Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants
Pinto, Dalila, Darvishi, Katayoon, Shi, Xinghua, Rajan, Diana, Rigler, Diane, Fitzgerald, Tom, Lionel, Anath C, Thiruvahindrapuram, Bhooma, MacDonald, Jeffrey R, Mills, Ryan, Prasad, Aparna, Noonan, Kristin, Gribble, Susan, Prigmore, Elena, Donahoe, Patricia K, Smith, Richard S, Park, Ji Hyeon, Hurles, Matthew E, Carter, Nigel P, Lee, Charles, Scherer, Stephen W, Feuk, Lars
Published in Nature biotechnology (01.06.2011)
Published in Nature biotechnology (01.06.2011)
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Journal Article
Automated Image Processing Workflow for Morphological Analysis of Fluorescence Microscopy Cell Images
Voigt, Sven P., Ravikumar, K., Basu, Bikramjit, Kalidindi, Surya R.
Published in JOM (1989) (01.08.2021)
Published in JOM (1989) (01.08.2021)
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Journal Article
PhytoPipe: a phytosanitary pipeline for plant pathogen detection and diagnosis using RNA-seq data
Hu, Xiaojun, Hurtado-Gonzales, Oscar P., Adhikari, Bishwo N., French-Monar, Ronald D., Malapi, Martha, Foster, Joseph A., McFarland, Clint D.
Published in BMC bioinformatics (13.12.2023)
Published in BMC bioinformatics (13.12.2023)
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Journal Article
Data mining techniques on astronomical spectra data – II. Classification analysis
Yang, Haifeng, Zhou, Lichan, Cai, Jianghui, Shi, Chenhui, Yang, Yuqing, Zhao, Xujun, Duan, Juncheng, Yin, Xiaona
Published in Monthly notices of the Royal Astronomical Society (01.02.2023)
Published in Monthly notices of the Royal Astronomical Society (01.02.2023)
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Journal Article