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PyLog: An Algorithm-Centric Python-Based FPGA Programming and Synthesis Flow
Huang, Sitao, Wu, Kun, Jeong, Hyunmin, Wang, Chengyue, Chen, Deming, Hwu, Wen-Mei
Published in IEEE transactions on computers (01.12.2021)
Published in IEEE transactions on computers (01.12.2021)
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Journal Article
MetPy: A Meteorological Python Library for Data Analysis and Visualization
May, Ryan M., Goebbert, Kevin H., Thielen, Jonathan E., Leeman, John R., Camron, M. Drew, Bruick, Zachary, Bruning, Eric C., Manser, Russell P., Arms, Sean C., Marsh, Patrick T.
Published in Bulletin of the American Meteorological Society (01.10.2022)
Published in Bulletin of the American Meteorological Society (01.10.2022)
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Journal Article
SVM-based prediction of linear B-cell epitopes using Bayes Feature Extraction
Wee, Lawrence JK, Simarmata, Diane, Kam, Yiu-Wing, Ng, Lisa FP, Tong, Joo Chuan
Published in BMC genomics (02.12.2010)
Published in BMC genomics (02.12.2010)
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Journal Article
A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis
Down, Thomas A, Rakyan, Vardhman K, Turner, Daniel J, Flicek, Paul, Li, Heng, Kulesha, Eugene, Gräf, Stefan, Johnson, Nathan, Herrero, Javier, Tomazou, Eleni M, Thorne, Natalie P, Bäckdahl, Liselotte, Herberth, Marlis, Howe, Kevin L, Jackson, David K, Miretti, Marcos M, Marioni, John C, Birney, Ewan, Hubbard, Tim J P, Durbin, Richard, Tavaré, Simon, Beck, Stephan
Published in Nature biotechnology (01.07.2008)
Published in Nature biotechnology (01.07.2008)
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Journal Article
Integrated Genetic and Epigenetic Analysis Identifies Haplotype-Specific Methylation in the FTO Type 2 Diabetes and Obesity Susceptibility Locus
Bell, Christopher G., Finer, Sarah, Lindgren, Cecilia M., Wilson, Gareth A., Rakyan, Vardhman K., Teschendorff, Andrew E., Akan, Pelin, Stupka, Elia, Down, Thomas A., Prokopenko, Inga, Morison, Ian M., Mill, Jonathan, Pidsley, Ruth, Deloukas, Panos, Frayling, Timothy M., Hattersley, Andrew T., McCarthy, Mark I., Beck, Stephan, Hitman, Graham A.
Published in PloS one (18.11.2010)
Published in PloS one (18.11.2010)
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Journal Article
Comparative phylogenomics of the food-borne pathogen Campylobacter jejuni reveals genetic markers predictive of infection source
Champion, O.L, Gaunt, M.W, Gundogdu, O, Elmi, A, Witney, A.A, Hinds, J, Dorrell, N, Wren, B.W
Published in Proceedings of the National Academy of Sciences - PNAS (01.11.2005)
Published in Proceedings of the National Academy of Sciences - PNAS (01.11.2005)
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Journal Article
Estimates of penetrance for recurrent pathogenic copy-number variations
Rosenfeld, Jill A., Coe, Bradley P., Eichler, Evan E., Cuckle, Howard, Shaffer, Lisa G.
Published in Genetics in medicine (01.06.2013)
Published in Genetics in medicine (01.06.2013)
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Journal Article
PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces
Singh, Gursimran, Chharia, Aviral, Upadhyay, Rahul, Kumar, Vinay, Longo, Luca
Published in PloS one (06.08.2025)
Published in PloS one (06.08.2025)
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Journal Article
scTPC: a novel semisupervised deep clustering model for scRNA-seq data
Qiu, Yushan, Yang, Lingfei, Jiang, Hao, Zou, Quan
Published in Bioinformatics (Oxford, England) (02.05.2024)
Published in Bioinformatics (Oxford, England) (02.05.2024)
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Journal Article
pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods
Behdenna, Abdelkader, Colange, Maximilien, Haziza, Julien, Gema, Aryo, Appé, Guillaume, Azencott, Chloé-Agathe, Nordor, Akpéli
Published in BMC bioinformatics (07.12.2023)
Published in BMC bioinformatics (07.12.2023)
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Journal Article
Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
A Versatile Statistical Analysis Algorithm to Detect Genome Copy Number Variation
Daruwala, Raoul-Sam, Rudra, Archisman, Ostrer, Harry, Lucito, Robert, Wigler, Michael, Mishra, Bud, Schwartz, Jacob T.
Published in Proceedings of the National Academy of Sciences - PNAS (16.11.2004)
Published in Proceedings of the National Academy of Sciences - PNAS (16.11.2004)
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Journal Article
Bridging Python to Silicon: The SODA Toolchain
Agostini, Nicolas Bohm, Curzel, Serena, Zhang, Jeff Jun, Limaye, Ankur, Tan, Cheng, Amatya, Vinay, Minutoli, Marco, Castellana, Vito Giovanni, Manzano, Joseph, Brooks, David, Wei, Gu-Yeon, Tumeo, Antonino
Published in IEEE MICRO (01.09.2022)
Published in IEEE MICRO (01.09.2022)
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Journal Article