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MetPy: A Meteorological Python Library for Data Analysis and Visualization

by May, Ryan M., Goebbert, Kevin H., Thielen, Jonathan E., Leeman, John R., Camron, M. Drew, Bruick, Zachary, Bruning, Eric C., Manser, Russell P., Arms, Sean C., Marsh, Patrick T.
Published in Bulletin of the American Meteorological Society (01.10.2022)

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PyLog: An Algorithm-Centric Python-Based FPGA Programming and Synthesis Flow

by Huang, Sitao, Wu, Kun, Jeong, Hyunmin, Wang, Chengyue, Chen, Deming, Hwu, Wen-Mei
Published in IEEE transactions on computers (01.12.2021)

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Biotite: a unifying open source computational biology framework in Python

by Kunzmann, Patrick, Hamacher, Kay
Published in BMC bioinformatics (01.10.2018)

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PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces

by Singh, Gursimran, Chharia, Aviral, Upadhyay, Rahul, Kumar, Vinay, Longo, Luca
Published in PloS one (06.08.2025)

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pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods

by Behdenna, Abdelkader, Colange, Maximilien, Haziza, Julien, Gema, Aryo, Appé, Guillaume, Azencott, Chloé-Agathe, Nordor, Akpéli
Published in BMC bioinformatics (07.12.2023)

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Bridging Python to Silicon: The SODA Toolchain

by Agostini, Nicolas Bohm, Curzel, Serena, Zhang, Jeff Jun, Limaye, Ankur, Tan, Cheng, Amatya, Vinay, Minutoli, Marco, Castellana, Vito Giovanni, Manzano, Joseph, Brooks, David, Wei, Gu-Yeon, Tumeo, Antonino
Published in IEEE MICRO (01.09.2022)

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Pytrf: a python package for finding tandem repeats from genomic sequences

by Du, Lianming, Sun, Dalin, Chen, Jiahao, Zhou, Xinyi, Zhao, Kelei, Zeng, Qianglin, Yang, Nan
Published in BMC bioinformatics (04.06.2025)

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CosinorPy: a python package for cosinor-based rhythmometry

by Moskon, Miha
Published in BMC bioinformatics (29.10.2020)

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An Introduction to Programming for Bioscientists: A Python-Based Primer

by Ekmekci, Berk, McAnany, Charles E., Mura, Cameron
Published in PLoS computational biology (01.06.2016)

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Immunopeptidomics toolkit library (IPTK): a python-based modular toolbox for analyzing immunopeptidomics data

by ElAbd, Hesham, Degenhardt, Frauke, Koudelka, Tomas, Kamps, Ann-Kristin, Tholey, Andreas, Bacher, Petra, Lenz, Tobias L., Franke, Andre, Wendorff, Mareike
Published in BMC bioinformatics (17.08.2021)

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Prop3D: A flexible, Python-based platform for machine learning with protein structural properties and biophysical data

by Draizen, Eli J., Readey, John, Mura, Cameron, Bourne, Philip E.
Published in BMC bioinformatics (04.01.2024)

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New Python-based methods for data processing

by Sauter, Nicholas K., Hattne, Johan, Grosse-Kunstleve, Ralf W., Echols, Nathaniel
Published in Acta crystallographica. Section D, Biological crystallography. (01.07.2013)

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Noisecut: a python package for noise-tolerant classification of binary data using prior knowledge integration and max-cut solutions

by Samadi, Moein E., Mirzaieazar, Hedieh, Mitsos, Alexander, Schuppert, Andreas
Published in BMC bioinformatics (20.04.2024)

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Visual dynamics: a WEB application for molecular dynamics simulation using GROMACS

by Vieira, Ivo Henrique Provensi, Botelho, Eduardo Buganemi, de Souza Gomes, Thales Junior, Kist, Roger, Caceres, Rafael Andrade, Zanchi, Fernando Berton
Published in BMC bioinformatics (22.03.2023)

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gmxapi: A GROMACS-native Python interface for molecular dynamics with ensemble and plugin support

by Irrgang, M. Eric, Davis, Caroline, Kasson, Peter M.
Published in PLoS computational biology (01.02.2022)

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Data Structures and Program Design Using Python - A Self-Teaching Introduction

by Malhotra, D, Malhotra, N
Year of Publication 2021

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A full-fledged micromagnetic code in fewer than 70 lines of NumPy

by Abert, Claas, Bruckner, Florian, Vogler, Christoph, Windl, Roman, Thanhoffer, Raphael, Suess, Dieter
Published in Journal of magnetism and magnetic materials (01.08.2015)

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KF-NIPT: K-mer and fetal fraction-based estimation of chromosomal anomaly from NIPT data

by Kim, Dongin, Sohn, Ji Yeon, Cho, Jin Hee, Choi, Ji-Hye, Oh, Gwi-young, Woo, Hyun Goo
Published in BMC bioinformatics (22.05.2025)

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A fast and efficient python library for interfacing with the Biological Magnetic Resonance Data Bank

by Smelter, Andrey, Astra, Morgan, Moseley, Hunter N. B.
Published in BMC bioinformatics (17.03.2017)

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minerva and minepy: a C engine for the MINE suite and its R, Python and MATLAB wrappers

by Albanese, Davide, Filosi, Michele, Visintainer, Roberto, Riccadonna, Samantha, Jurman, Giuseppe, Furlanello, Cesare
Published in Bioinformatics (01.02.2013)

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