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MetPy: A Meteorological Python Library for Data Analysis and Visualization

by May, Ryan M., Goebbert, Kevin H., Thielen, Jonathan E., Leeman, John R., Camron, M. Drew, Bruick, Zachary, Bruning, Eric C., Manser, Russell P., Arms, Sean C., Marsh, Patrick T.
Published in Bulletin of the American Meteorological Society (01.10.2022)

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PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces

by Singh, Gursimran, Chharia, Aviral, Upadhyay, Rahul, Kumar, Vinay, Longo, Luca
Published in PloS one (06.08.2025)

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PyLog: An Algorithm-Centric Python-Based FPGA Programming and Synthesis Flow

by Huang, Sitao, Wu, Kun, Jeong, Hyunmin, Wang, Chengyue, Chen, Deming, Hwu, Wen-Mei
Published in IEEE transactions on computers (01.12.2021)

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Biotite: a unifying open source computational biology framework in Python

by Kunzmann, Patrick, Hamacher, Kay
Published in BMC bioinformatics (01.10.2018)

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PHOTONAI—A Python API for rapid machine learning model development

by Leenings, Ramona, Winter, Nils Ralf, Plagwitz, Lucas, Holstein, Vincent, Ernsting, Jan, Sarink, Kelvin, Fisch, Lukas, Steenweg, Jakob, Kleine-Vennekate, Leon, Gebker, Julian, Emden, Daniel, Grotegerd, Dominik, Opel, Nils, Risse, Benjamin, Jiang, Xiaoyi, Dannlowski, Udo, Hahn, Tim
Published in PloS one (21.07.2021)

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Bioinformatic pipelines in Python with Leaf

by Napolitano, Francesco, Mariani-Costantini, Renato, Tagliaferri, Roberto
Published in BMC bioinformatics (21.06.2013)

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Innovative UAV LiDAR Generated Point-Cloud Processing Algorithm in Python for Unsupervised Detection and Analysis of Agricultural Field-Plots

by Polák, Michal, Miřijovský, Jakub, Hernándiz, Alba E., Špíšek, Zdeněk, Koprna, Radoslav, Humplík, Jan F.
Published in Remote sensing (Basel, Switzerland) (10.08.2021)

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pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods

by Behdenna, Abdelkader, Colange, Maximilien, Haziza, Julien, Gema, Aryo, Appé, Guillaume, Azencott, Chloé-Agathe, Nordor, Akpéli
Published in BMC bioinformatics (07.12.2023)

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Bridging Python to Silicon: The SODA Toolchain

by Agostini, Nicolas Bohm, Curzel, Serena, Zhang, Jeff Jun, Limaye, Ankur, Tan, Cheng, Amatya, Vinay, Minutoli, Marco, Castellana, Vito Giovanni, Manzano, Joseph, Brooks, David, Wei, Gu-Yeon, Tumeo, Antonino
Published in IEEE MICRO (01.09.2022)

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FalseColor-Python: A rapid intensity-leveling and digital-staining package for fluorescence-based slide-free digital pathology

by Serafin, Robert, Xie, Weisi, Glaser, Adam K., Liu, Jonathan T. C.
Published in PloS one (01.10.2020)

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Gnocis: An integrated system for interactive and reproducible analysis and modelling of cis-regulatory elements in Python 3

by Bredesen-Aa, Bjørn André, Rehmsmeier, Marc
Published in PloS one (09.09.2022)

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Improved Petrophysical Property Evaluation of Shaly Sand Reservoirs Using Modified Grey Wolf Intelligence Algorithm

by Jia, Bao, Xian, Chenggang, Jia, Wenfeng, Su, Jianzheng
Published in Computational geosciences (01.08.2023)

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2FAST2Q: a general-purpose sequence search and counting program for FASTQ files

by Bravo, Afonso M., Typas, Athanasios, Veening, Jan-Willem
Published in PeerJ (San Francisco, CA) (25.10.2022)

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Pytrf: a python package for finding tandem repeats from genomic sequences

by Du, Lianming, Sun, Dalin, Chen, Jiahao, Zhou, Xinyi, Zhao, Kelei, Zeng, Qianglin, Yang, Nan
Published in BMC bioinformatics (04.06.2025)

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MultilayerPy (v1.0): a Python-based framework for building, running and optimising kinetic multi-layer models of aerosols and films

by Milsom, Adam, Lees, Amy, Squires, Adam M., Pfrang, Christian
Published in Geoscientific Model Development (22.09.2022)

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OTSun, a python package for the optical analysis of solar-thermal collectors and photovoltaic cells with arbitrary geometry

by Cardona, Gabriel, Pujol-Nadal, Ramon
Published in PloS one (14.10.2020)

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CosinorPy: a python package for cosinor-based rhythmometry

by Moskon, Miha
Published in BMC bioinformatics (29.10.2020)

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GenProgJS: A Baseline System for Test-Based Automated Repair of JavaScript Programs

by Csuvik, Viktor, Horvath, Daniel, Lajko, Mark, Vidacs, Laszlo
Published in IEEE transactions on software engineering (01.02.2025)

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MEG and EEG data analysis with MNE-Python

by Gramfort, Alexandre
Published in Frontiers in neuroscience (26.12.2013)

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astrophot: fitting everything everywhere all at once in astronomical images

by Stone, Connor J, Courteau, Stéphane, Cuillandre, Jean-Charles, Hezaveh, Yashar, Perreault-Levasseur, Laurence, Arora, Nikhil
Published in Monthly notices of the Royal Astronomical Society (01.11.2023)

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