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    SciPy 1.0: fundamental algorithms for scientific computing in Python
                                      
                                            Virtanen, Pauli,                              Gommers, Ralf,                              Oliphant, Travis E.,                              Haberland, Matt,                              Reddy, Tyler,                              Cournapeau, David,                              Burovski, Evgeni,                              Peterson, Pearu,                              Weckesser, Warren,                              Bright, Jonathan,                              van der Walt, Stéfan J.,                              Brett, Matthew,                              Wilson, Joshua,                              Millman, K. Jarrod,                              Mayorov, Nikolay,                              Nelson, Andrew R. J.,                              Jones, Eric,                              Kern, Robert,                              Larson, Eric,                              Carey, C J,                              Polat, İlhan,                              Feng, Yu,                              Moore, Eric W.,                              VanderPlas, Jake,                              Laxalde, Denis,                              Perktold, Josef,                              Cimrman, Robert,                              Henriksen, Ian,                              Quintero, E. A.,                              Harris, Charles R.,                              Archibald, Anne M.,                              Ribeiro, Antônio H.,                              Pedregosa, Fabian,                              van Mulbregt, Paul                              
Published in Nature methods (01.03.2020)
                   
      
      
                                                  Published in Nature methods (01.03.2020)
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              Journal Article
          
              
          MetPy: A Meteorological Python Library for Data Analysis and Visualization
                                      
                                            May, Ryan M.,                              Goebbert, Kevin H.,                              Thielen, Jonathan E.,                              Leeman, John R.,                              Camron, M. Drew,                              Bruick, Zachary,                              Bruning, Eric C.,                              Manser, Russell P.,                              Arms, Sean C.,                              Marsh, Patrick T.                              
Published in Bulletin of the American Meteorological Society (01.10.2022)
                   
      
      
                                                  Published in Bulletin of the American Meteorological Society (01.10.2022)
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              Journal Article
          
              
          Parallel distributed computing using Python
                                      
                                            Dalcin, Lisandro D.,                              Paz, Rodrigo R.,                              Kler, Pablo A.,                              Cosimo, Alejandro                              
Published in Advances in water resources (01.09.2011)
                   
      
      
                                                  Published in Advances in water resources (01.09.2011)
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              Journal Article
          
              
          COBRApy: COnstraints-Based Reconstruction and Analysis for Python
                                      
                                            Ebrahim, Ali,                              Lerman, Joshua A,                              Palsson, Bernhard O,                              Hyduke, Daniel R                              
Published in BMC systems biology (08.08.2013)
                   
      
      
                                                  Published in BMC systems biology (08.08.2013)
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              Journal Article
          
              
          Comparative Analysis of AI Models for Python Code Generation: A HumanEval Benchmark Study
                                      
                                            Bayram, Ali,                              Menekse Dalveren, Gonca Gokce,                              Derawi, Mohammad                              
Published in Applied sciences (10.09.2025)
                   
      
      
                                                  Published in Applied sciences (10.09.2025)
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              Journal Article
          
              
          PODPAC: open-source Python software for enabling harmonized, plug-and-play processing of disparate earth observation data sets and seamless transition onto the serverless cloud by earth scientists
                                      
                                            Ueckermann, Mattheus P.,                              Bieszczad, Jerry,                              Entekhabi, Dara,                              Shapiro, Marc L.,                              Callendar, David R.,                              Sullivan, David,                              Milloy, Jeffrey                              
Published in Earth science informatics (01.12.2020)
                   
      
      
                                                  Published in Earth science informatics (01.12.2020)
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              Journal Article
          
              
          Obtaining the user-defined polygons inside a closed contour with holes
                                      
                                            Molano, R.,                              Sancho, J. C.,                              Ávila, M. M.,                              Rodríguez, P. G.,                              Caro, A.                              
Published in The Visual computer (01.09.2024)
                   
      
      
                                                  Published in The Visual computer (01.09.2024)
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              Journal Article
          
              
          Automated Image Processing Workflow for Morphological Analysis of Fluorescence Microscopy Cell Images
                                      
                                            Voigt, Sven P.,                              Ravikumar, K.,                              Basu, Bikramjit,                              Kalidindi, Surya R.                              
Published in JOM (1989) (01.08.2021)
                   
      
      
                                                  Published in JOM (1989) (01.08.2021)
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              Journal Article
          
              
          NeuralMag: an open-source nodal finite-difference code for inverse micromagnetics
                                      
                                            Abert, C.,                              Bruckner, F.,                              Voronov, A.,                              Lang, M.,                              Pathak, S. A.,                              Holt, S.,                              Kraft, R.,                              Allayarov, R.,                              Flauger, P.,                              Koraltan, S.,                              Schrefl, T.,                              Chumak, A.,                              Fangohr, H.,                              Suess, D.                              
Published in npj computational materials (01.01.2025)
                   
      
      
                                                  Published in npj computational materials (01.01.2025)
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              Journal Article
          
              
          Statistical Insights into Spatial Patterns: A Panorama About Lacunarity
                                      
                                            Pinto, Erveton P.,                              Pires, Marcelo A.,                              Antunes, Thiago B. F.,                              da Silva, Rone N.,                              Queirós, Sílvio M. Duarte                              
Published in Fractal and fractional (01.09.2025)
                   
      
      
                                                  Published in Fractal and fractional (01.09.2025)
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              Journal Article
          
              
          pyOpenMS: A Python-based interface to the OpenMS mass-spectrometry algorithm library
                                      
                                            Röst, Hannes L.,                              Schmitt, Uwe,                              Aebersold, Ruedi,                              Malmström, Lars                              
Published in Proteomics (Weinheim) (01.01.2014)
                   
      
      
                                                  Published in Proteomics (Weinheim) (01.01.2014)
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          Domain Knowledge Matters: Improving Prompts with Fix Templates for Repairing Python Type Errors
                                      
                                            Peng, Yun,                              Gao, Shuzheng,                              Gao, Cuiyun,                              Huo, Yintong,                              Lyu, Michael R.                              
Published in Proceedings / International Conference on Software Engineering (14.04.2024)
                   
      
      
                                                  Published in Proceedings / International Conference on Software Engineering (14.04.2024)
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              Conference Proceeding
          
              
          GSEApy: a comprehensive package for performing gene set enrichment analysis in Python
                                      
                                            Fang, Zhuoqing,                              Liu, Xinyuan,                              Peltz, Gary                              
Published in Bioinformatics (Oxford, England) (01.01.2023)
                   
      
      
                                                  Published in Bioinformatics (Oxford, England) (01.01.2023)
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              Journal Article
          
              
          PyLog: An Algorithm-Centric Python-Based FPGA Programming and Synthesis Flow
                                      
                                            Huang, Sitao,                              Wu, Kun,                              Jeong, Hyunmin,                              Wang, Chengyue,                              Chen, Deming,                              Hwu, Wen-Mei                              
Published in IEEE transactions on computers (01.12.2021)
                   
      
      
                                                  Published in IEEE transactions on computers (01.12.2021)
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              Journal Article