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    SciPy 1.0: fundamental algorithms for scientific computing in Python
                                      
                                            Virtanen, Pauli,                              Gommers, Ralf,                              Oliphant, Travis E.,                              Haberland, Matt,                              Reddy, Tyler,                              Cournapeau, David,                              Burovski, Evgeni,                              Peterson, Pearu,                              Weckesser, Warren,                              Bright, Jonathan,                              van der Walt, Stéfan J.,                              Brett, Matthew,                              Wilson, Joshua,                              Millman, K. Jarrod,                              Mayorov, Nikolay,                              Nelson, Andrew R. J.,                              Jones, Eric,                              Kern, Robert,                              Larson, Eric,                              Carey, C J,                              Polat, İlhan,                              Feng, Yu,                              Moore, Eric W.,                              VanderPlas, Jake,                              Laxalde, Denis,                              Perktold, Josef,                              Cimrman, Robert,                              Henriksen, Ian,                              Quintero, E. A.,                              Harris, Charles R.,                              Archibald, Anne M.,                              Ribeiro, Antônio H.,                              Pedregosa, Fabian,                              van Mulbregt, Paul                              
Published in Nature methods (01.03.2020)
                   
      
      
                                                  Published in Nature methods (01.03.2020)
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              Journal Article
          
              
          pyOpenMS: A Python-based interface to the OpenMS mass-spectrometry algorithm library
                                      
                                            Röst, Hannes L.,                              Schmitt, Uwe,                              Aebersold, Ruedi,                              Malmström, Lars                              
Published in Proteomics (Weinheim) (01.01.2014)
                   
      
      
                                                  Published in Proteomics (Weinheim) (01.01.2014)
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              Journal Article
          
              
          Domain Knowledge Matters: Improving Prompts with Fix Templates for Repairing Python Type Errors
                                      
                                            Peng, Yun,                              Gao, Shuzheng,                              Gao, Cuiyun,                              Huo, Yintong,                              Lyu, Michael R.                              
Published in Proceedings / International Conference on Software Engineering (14.04.2024)
                   
      
      
                                                  Published in Proceedings / International Conference on Software Engineering (14.04.2024)
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              Conference Proceeding
          
              
          GSEApy: a comprehensive package for performing gene set enrichment analysis in Python
                                      
                                            Fang, Zhuoqing,                              Liu, Xinyuan,                              Peltz, Gary                              
Published in Bioinformatics (Oxford, England) (01.01.2023)
                   
      
      
                                                  Published in Bioinformatics (Oxford, England) (01.01.2023)
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              Journal Article
          
              
          MetPy: A Meteorological Python Library for Data Analysis and Visualization
                                      
                                            May, Ryan M.,                              Goebbert, Kevin H.,                              Thielen, Jonathan E.,                              Leeman, John R.,                              Camron, M. Drew,                              Bruick, Zachary,                              Bruning, Eric C.,                              Manser, Russell P.,                              Arms, Sean C.,                              Marsh, Patrick T.                              
Published in Bulletin of the American Meteorological Society (01.10.2022)
                   
      
      
                                                  Published in Bulletin of the American Meteorological Society (01.10.2022)
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              Journal Article
          
              
          PyLog: An Algorithm-Centric Python-Based FPGA Programming and Synthesis Flow
                                      
                                            Huang, Sitao,                              Wu, Kun,                              Jeong, Hyunmin,                              Wang, Chengyue,                              Chen, Deming,                              Hwu, Wen-Mei                              
Published in IEEE transactions on computers (01.12.2021)
                   
      
      
                                                  Published in IEEE transactions on computers (01.12.2021)
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              Journal Article
          
              
          CoastSat: A Google Earth Engine-enabled Python toolkit to extract shorelines from publicly available satellite imagery
                                      
                                            Vos, Kilian,                              Splinter, Kristen D.,                              Harley, Mitchell D.,                              Simmons, Joshua A.,                              Turner, Ian L.                              
Published in Environmental modelling & software : with environment data news (01.12.2019)
                   
      
      
                                                  Published in Environmental modelling & software : with environment data news (01.12.2019)
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              Journal Article
          
              
          PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces
                                      
                                            Singh, Gursimran,                              Chharia, Aviral,                              Upadhyay, Rahul,                              Kumar, Vinay,                              Longo, Luca                              
Published in PloS one (06.08.2025)
                   
      
      
                                                  Published in PloS one (06.08.2025)
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              Journal Article
          
              
          PHOTONAI—A Python API for rapid machine learning model development
                                      
                                            Leenings, Ramona,                              Winter, Nils Ralf,                              Plagwitz, Lucas,                              Holstein, Vincent,                              Ernsting, Jan,                              Sarink, Kelvin,                              Fisch, Lukas,                              Steenweg, Jakob,                              Kleine-Vennekate, Leon,                              Gebker, Julian,                              Emden, Daniel,                              Grotegerd, Dominik,                              Opel, Nils,                              Risse, Benjamin,                              Jiang, Xiaoyi,                              Dannlowski, Udo,                              Hahn, Tim                              
Published in PloS one (21.07.2021)
                   
      
      
                                                  Published in PloS one (21.07.2021)
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              Journal Article
          
              
          Conflict-aware Inference of Python Compatible Runtime Environments with Domain Knowledge Graph
                                      
                                            Cheng, Wei,                              Zhu, Xiangrong,                              Hu, Wei                              
Published in 2022 IEEE/ACM 44th International Conference on Software Engineering (ICSE) (01.05.2022)
                   
      
      
                                                  Published in 2022 IEEE/ACM 44th International Conference on Software Engineering (ICSE) (01.05.2022)
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              Conference Proceeding
          
              
          Efficient single-scattering lookup table for lidar and polarimeter phytoplankton studies
                                      
                                            Chemyakin, Eduard,                              Stamnes, Snorre,                              Allen, James,                              Burton, Sharon P,                              Hair, Johnathan,                              Hostetler, Chris,                              Chowdhary, Jacek,                              van Diedenhoven, Bastiaan,                              Cairns, Brian                              
Published in Optics letters (01.05.2024)
                   
      
      
                                                  Published in Optics letters (01.05.2024)
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              Journal Article
          
              
          A structural health monitoring Python code to detect small changes in frequencies
                                      
                                            Nedelcu, Dorian,                              Gillich, Gilbert-Rainer                              
Published in Mechanical systems and signal processing (15.01.2021)
                   
      
      
                                                  Published in Mechanical systems and signal processing (15.01.2021)
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              Journal Article
          
              
          pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods
                                      
                                            Behdenna, Abdelkader,                              Colange, Maximilien,                              Haziza, Julien,                              Gema, Aryo,                              Appé, Guillaume,                              Azencott, Chloé-Agathe,                              Nordor, Akpéli                              
Published in BMC bioinformatics (07.12.2023)
                   
      
      
                                                  Published in BMC bioinformatics (07.12.2023)
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              Journal Article