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Core Imaging Library - Part I: a versatile Python framework for tomographic imaging

by Jørgensen, J. S., Ametova, E., Burca, G., Fardell, G., Papoutsellis, E., Pasca, E., Thielemans, K., Turner, M., Warr, R., Lionheart, W. R. B., Withers, P. J.
Published in Philosophical transactions of the Royal Society of London. Series A: Mathematical, physical, and engineering sciences (23.08.2021)

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PHOTONAI—A Python API for rapid machine learning model development

by Leenings, Ramona, Winter, Nils Ralf, Plagwitz, Lucas, Holstein, Vincent, Ernsting, Jan, Sarink, Kelvin, Fisch, Lukas, Steenweg, Jakob, Kleine-Vennekate, Leon, Gebker, Julian, Emden, Daniel, Grotegerd, Dominik, Opel, Nils, Risse, Benjamin, Jiang, Xiaoyi, Dannlowski, Udo, Hahn, Tim
Published in PloS one (21.07.2021)

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Efficiently accelerated bioimage analysis with NanoPyx, a Liquid Engine-powered Python framework

by Saraiva, Bruno M., Cunha, Inês, Brito, António D., Follain, Gautier, Portela, Raquel, Haase, Robert, Pereira, Pedro M., Jacquemet, Guillaume, Henriques, Ricardo
Published in Nature methods (01.02.2025)

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PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces

by Singh, Gursimran, Chharia, Aviral, Upadhyay, Rahul, Kumar, Vinay, Longo, Luca
Published in PloS one (06.08.2025)

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The Community Simulator: A Python package for microbial ecology

by Marsland, Robert, Cui, Wenping, Goldford, Joshua, Mehta, Pankaj
Published in PloS one (24.03.2020)

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PyRates—A Python framework for rate-based neural simulations

by Gast, Richard, Rose, Daniel, Salomon, Christoph, Möller, Harald E., Weiskopf, Nikolaus, Knösche, Thomas R.
Published in PloS one (16.12.2019)

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pyDHM: A Python library for applications in digital holographic microscopy

by Castañeda, Raul, Trujillo, Carlos, Doblas, Ana
Published in PloS one (10.10.2022)

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FalseColor-Python: A rapid intensity-leveling and digital-staining package for fluorescence-based slide-free digital pathology

by Serafin, Robert, Xie, Weisi, Glaser, Adam K., Liu, Jonathan T. C.
Published in PloS one (01.10.2020)

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Innovative UAV LiDAR Generated Point-Cloud Processing Algorithm in Python for Unsupervised Detection and Analysis of Agricultural Field-Plots

by Polák, Michal, Miřijovský, Jakub, Hernándiz, Alba E., Špíšek, Zdeněk, Koprna, Radoslav, Humplík, Jan F.
Published in Remote sensing (Basel, Switzerland) (10.08.2021)

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Gnocis: An integrated system for interactive and reproducible analysis and modelling of cis-regulatory elements in Python 3

by Bredesen-Aa, Bjørn André, Rehmsmeier, Marc
Published in PloS one (09.09.2022)

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OTSun, a python package for the optical analysis of solar-thermal collectors and photovoltaic cells with arbitrary geometry

by Cardona, Gabriel, Pujol-Nadal, Ramon
Published in PloS one (14.10.2020)

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pyPaSWAS: Python-based multi-core CPU and GPU sequence alignment

by Warris, Sven, Timal, N. Roshan N., Kempenaar, Marcel, Poortinga, Arne M., van de Geest, Henri, Varbanescu, Ana L., Nap, Jan-Peter
Published in PloS one (02.01.2018)

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Is the Corpus Ready for Machine Translation? A Case Study with Python to Pseudo-Code Corpus

by Rai, Sawan, Belwal, Ramesh Chandra, Gupta, Atul
Published in Arabian journal for science and engineering (01.02.2023)

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GLAMbox: A Python toolbox for investigating the association between gaze allocation and decision behaviour

by Molter, Felix, Thomas, Armin W, Heekeren, Hauke R, Mohr, Peter N. C
Published in PloS one (16.12.2019)

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Component-oriented acausal modeling of the dynamical systems in Python language on the example of the model of the sucker rod string

by Kopei, Volodymyr B., Onysko, Oleh R., Panchuk, Vitalii G.
Published in PeerJ. Computer science (28.10.2019)

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Evaluating machine learning algorithms to predict lameness in dairy cattle

by Neupane, Rajesh, Aryal, Ashrant, Haeussermann, Angelika, Hartung, Eberhard, Pinedo, Pablo, Paudyal, Sushil
Published in PloS one (18.07.2024)

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Prediction of stunting and its socioeconomic determinants among adolescent girls in Ethiopia using machine learning algorithms

by Zemariam, Alemu Birara, Abate, Biruk Beletew, Alamaw, Addis Wondmagegn, Lake, Eyob shitie, Yilak, Gizachew, Ayele, Mulat, Tilahun, Befkad Derese, Ngusie, Habtamu Setegn
Published in PloS one (24.01.2025)

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Screening for Parkinson’s disease using “computer vision”

by Kasemsap, Narongrit, Tikkapanyo, Purinat, Wanjantuk, Panupong, Vorasoot, Nisa, Kongbunkiat, Kannikar, Panitchote, Anupol
Published in PloS one (12.08.2025)

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Enhancing multiparametric optical biosensing with AI: a Python-based FDTD/ML framework for spectral feature extraction and optimization

by Haidari, Gholamhosain
Published in Applied physics. B, Lasers and optics (01.10.2025)

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Impacts of speciation and extinction measured by an evolutionary decay clock

by Hoyal Cuthill, Jennifer F., Guttenberg, Nicholas, Budd, Graham E.
Published in Nature (24.12.2020)

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