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PyImageJ: A library for integrating ImageJ and Python
Rueden, Curtis T., Hiner, Mark C., Evans, Edward L., Pinkert, Michael A., Lucas, Alice M., Carpenter, Anne E., Cimini, Beth A., Eliceiri, Kevin W.
Published in Nature methods (01.11.2022)
Published in Nature methods (01.11.2022)
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Journal Article
Nipype: A Flexible, Lightweight and Extensible Neuroimaging Data Processing Framework in Python
Gorgolewski, Krzysztof, Burns, Christopher D., Madison, Cindee, Clark, Dav, Halchenko, Yaroslav O., Waskom, Michael L., Ghosh, Satrajit S.
Published in Frontiers in neuroinformatics (22.08.2011)
Published in Frontiers in neuroinformatics (22.08.2011)
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Journal Article
VMseg: Using spatial variance to automatically segment retinal non-perfusion on OCT-angiography
LE BOITE, Hugo, COUTURIER, Aude, TADAYONI, Ramin, LAMARD, Mathieu, QUELLEC, Gwenolé
Published in PloS one (07.08.2024)
Published in PloS one (07.08.2024)
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Journal Article
Pyeo: A Python package for near-real-time forest cover change detection from Earth observation using machine learning
Roberts, J.F., Mwangi, R., Mukabi, F., Njui, J., Nzioka, K., Ndambiri, J.K., Bispo, P.C., Espirito-Santo, F.D.B., Gou, Y., Johnson, S.C.M., Louis, V., Pacheco-Pascagaza, A.M., Rodriguez-Veiga, P., Tansey, K., Upton, C., Robb, C., Balzter, H.
Published in Computers & geosciences (01.10.2022)
Published in Computers & geosciences (01.10.2022)
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Journal Article
Automatic Evaluation of Soybean Seed Traits Using RGB Image Data and a Python Algorithm
Ghimire, Amit, Kim, Seong-Hoon, Cho, Areum, Jang, Naeun, Ahn, Seonhwa, Islam, Mohammad Shafiqul, Mansoor, Sheikh, Chung, Yong Suk, Kim, Yoonha
Published in Plants (Basel) (28.08.2023)
Published in Plants (Basel) (28.08.2023)
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Journal Article
ItemComplex: A Python-based visualization framework for ex-post organization and integration of large language-based datasets
Janson, Karina, Gottfried, Karl, Reis, Olaf, Kornhuber, Johannes, Eichler, Anna, Deuschle, Michael, Banaschewski, Tobias, Nees, Frauke
Published in European psychiatry (26.05.2025)
Published in European psychiatry (26.05.2025)
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Journal Article
A New Automatic Hydrological Station Relocation Algorithm (ASRA) for Moving Hydrological Stations Onto a Simulated Digital River Network
Wang, Kun, Yan, Denghua, Zhou, Zuhao, Weng, Baisha, Qin, Tianling, Bi, Wuxia, Liu, Siyu
Published in Water resources research (01.05.2024)
Published in Water resources research (01.05.2024)
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Journal Article
PyAGH: a python package to fast construct kinship matrices based on different levels of omic data
Zhao, Wei, Qadri, Qamar Raza, Zhang, Zhenyang, Wang, Zhen, Pan, Yuchun, Wang, Qishan, Zhang, Zhe
Published in BMC bioinformatics (18.04.2023)
Published in BMC bioinformatics (18.04.2023)
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Journal Article
A K-Nearest Neighbors Algorithm in Python for Visualizing the 3D Stratigraphic Architecture of the Llobregat River Delta in NE Spain
Bullejos, Manuel, Cabezas, David, Martín-Martín, Manuel, Alcalá, Francisco Javier
Published in Journal of marine science and engineering (01.07.2022)
Published in Journal of marine science and engineering (01.07.2022)
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Journal Article
Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
Short communication: age2exhume – a MATLAB/Python script to calculate steady-state vertical exhumation rates from thermochronometric ages and application to the Himalaya
van der Beek, Peter, Schildgen, Taylor F.
Published in Geochronology (Göttingen. Online) (16.01.2023)
Published in Geochronology (Göttingen. Online) (16.01.2023)
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Journal Article
pygeodyn 1.1.0: a Python package for geomagnetic data assimilation
Huder, Loïc, Gillet, Nicolas, Thollard, Franck
Published in Geoscientific Model Development (29.08.2019)
Published in Geoscientific Model Development (29.08.2019)
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Journal Article
PyMS: a Python toolkit for processing of gas chromatography-mass spectrometry (GC-MS) data. Application and comparative study of selected tools
O'Callaghan, Sean, De Souza, David P, Isaac, Andrew, Wang, Qiao, Hodkinson, Luke, Olshansky, Moshe, Erwin, Tim, Appelbe, Bill, Tull, Dedreia L, Roessner, Ute, Bacic, Antony, McConville, Malcolm J, Likić, Vladimir A
Published in BMC bioinformatics (30.05.2012)
Published in BMC bioinformatics (30.05.2012)
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Journal Article
PyNeval: A Python Toolbox for Evaluating Neuron Reconstruction Performance
Zhang, Han, Liu, Chao, Yu, Yifei, Dai, Jianhua, Zhao, Ting, Zheng, Nenggan
Published in Frontiers in neuroinformatics (28.01.2022)
Published in Frontiers in neuroinformatics (28.01.2022)
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Journal Article