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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
Short communication: age2exhume – a MATLAB/Python script to calculate steady-state vertical exhumation rates from thermochronometric ages and application to the Himalaya
van der Beek, Peter, Schildgen, Taylor F.
Published in Geochronology (Göttingen. Online) (16.01.2023)
Published in Geochronology (Göttingen. Online) (16.01.2023)
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Journal Article
Screening for Parkinson’s disease using “computer vision”
Kasemsap, Narongrit, Tikkapanyo, Purinat, Wanjantuk, Panupong, Vorasoot, Nisa, Kongbunkiat, Kannikar, Panitchote, Anupol
Published in PloS one (12.08.2025)
Published in PloS one (12.08.2025)
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Journal Article
VMseg: Using spatial variance to automatically segment retinal non-perfusion on OCT-angiography
LE BOITE, Hugo, COUTURIER, Aude, TADAYONI, Ramin, LAMARD, Mathieu, QUELLEC, Gwenolé
Published in PloS one (07.08.2024)
Published in PloS one (07.08.2024)
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Journal Article
SP07. A Proposed Prenatal Diagnostic Algorithm for Microtia and Aural Atresia to Improve Early Detection, Parental Preparation, and Patient Outcomes
Sharma, Ishpriya, Mehta, Aashna, Hashemi, Kiana, D'Ambra, Amanda, Hanegan, Cameron, Palacios, Christian, Tahiri, Youssef, Kellogg, Brian C., Pritchett, Cedric, Mitta, Melanie, Taboada, Claudia, Leto Barone, Angelo A.
Published in Plastic and reconstructive surgery. Global open (01.05.2025)
Published in Plastic and reconstructive surgery. Global open (01.05.2025)
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Journal Article
Recent developments in the PHENIX software for automated crystallographic structure determination
Adams, Paul D., Gopal, Kreshna, Grosse-Kunstleve, Ralf W., Hung, Li-Wei, Ioerger, Thomas R., McCoy, Airlie J., Moriarty, Nigel W., Pai, Reetal K., Read, Randy J., Romo, Tod D., Sacchettini, James C., Sauter, Nicholas K., Storoni, Laurent C., Terwilliger, Thomas C.
Published in Journal of synchrotron radiation (01.01.2004)
Published in Journal of synchrotron radiation (01.01.2004)
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Journal Article
Conference Proceeding
Data on Cu- and Ni-Si-Mn-rich solute clustering in a neutron irradiated austenitic stainless steel
Levine, Samara M., Pareige, Cristelle, Jiao, Zhijie, Edmondson, Philip D., Was, Gary S., Zinkle, Steven J., Bhattacharya, Arunodaya
Published in Data in brief (01.06.2022)
Published in Data in brief (01.06.2022)
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Journal Article
Intriguing aural foreign body and algorithm of management of foreign body
Ponnuvelu, Komalar, Saniasiaya, Jeyasakthy, Abdul Gani, Norhaslinda
Published in BMJ case reports (16.08.2021)
Published in BMJ case reports (16.08.2021)
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Journal Article
A Taste of Python – Discrete and Fast Fourier Transforms
Mohammad Rafiq Muqri, Wilson, Eric John, Shakib, Javad
Published in 2015 ASEE Annual Conference and Exposition Proceedings (14.06.2015)
Published in 2015 ASEE Annual Conference and Exposition Proceedings (14.06.2015)
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Conference Proceeding
SciPy 1.0: fundamental algorithms for scientific computing in Python
Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul
Published in Nature methods (01.03.2020)
Published in Nature methods (01.03.2020)
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Journal Article
Bonsu: the interactive phase retrieval suite
Newton, Marcus C., Nishino, Yoshinori, Robinson, Ian K.
Published in Journal of Applied Crystallography (01.08.2012)
Published in Journal of Applied Crystallography (01.08.2012)
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Journal Article
A framework to create customised LHC analyses within CheckMATE
Kim, Jong Soo, Schmeier, Daniel, Tattersall, Jamie, Rolbiecki, Krzysztof
Published in Computer physics communications (01.11.2015)
Published in Computer physics communications (01.11.2015)
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Journal Article