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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data
Georgi, Benjamin, Costa, Ivan Gesteira, Schliep, Alexander
Published in BMC bioinformatics (06.01.2010)
Published in BMC bioinformatics (06.01.2010)
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Journal Article
Uncovering structural ensembles from single-particle cryo-EM data using cryoDRGN
Kinman, Laurel F., Powell, Barrett M., Zhong, Ellen D., Berger, Bonnie, Davis, Joseph H.
Published in Nature protocols (01.02.2023)
Published in Nature protocols (01.02.2023)
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Journal Article
Toward a unified framework for interpreting machine-learning models in neuroimaging
Kohoutová, Lada, Heo, Juyeon, Cha, Sungmin, Lee, Sungwoo, Moon, Taesup, Wager, Tor D., Woo, Choong-Wan
Published in Nature protocols (01.04.2020)
Published in Nature protocols (01.04.2020)
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Journal Article
Processor Array Architectures for Scalable Radix 4 Montgomery Modular Multiplication Algorithm
Ibrahim, A, Gebali, F, Elsimary, H, Nassar, A
Published in IEEE transactions on parallel and distributed systems (01.07.2011)
Published in IEEE transactions on parallel and distributed systems (01.07.2011)
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Journal Article
Interest objects detection for self-driving cars using a Deep learning approach
Awandu, Chibundu, Lamichhane, Santosh, Tyson, Shaquan, Kalenga, Aldridge, Mwase, Buchizya, Brown, Tianna, Calderon, Juan
Published in Florida scientist (01.09.2024)
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Published in Florida scientist (01.09.2024)
Journal Article
PyImageJ: A library for integrating ImageJ and Python
Rueden, Curtis T., Hiner, Mark C., Evans, Edward L., Pinkert, Michael A., Lucas, Alice M., Carpenter, Anne E., Cimini, Beth A., Eliceiri, Kevin W.
Published in Nature methods (01.11.2022)
Published in Nature methods (01.11.2022)
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Journal Article
QFlow lite dataset: A machine-learning approach to the charge states in quantum dot experiments
Zwolak, Justyna P., Kalantre, Sandesh S., Wu, Xingyao, Ragole, Stephen, Taylor, Jacob M.
Published in PloS one (17.10.2018)
Published in PloS one (17.10.2018)
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Journal Article
Interference suppression in a GPS receiver with 4 element array design and implementation of beamforming algorithms
Dabak, Omer Can, Erdem, Fatih, Sonmez, Tolga, Alatan, Lale, Koc, S. Sencer
Published in IEEE/ION Position Location and Navigation Symposium (01.04.2016)
Published in IEEE/ION Position Location and Navigation Symposium (01.04.2016)
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Conference Proceeding
Journal Article
Python tools for structural tasks in chemistry
Ryzhkov, Fedor V., Ryzhkova, Yuliya E., Elinson, Michail N.
Published in Molecular diversity (01.08.2025)
Published in Molecular diversity (01.08.2025)
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Journal Article