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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
SciPy 1.0: fundamental algorithms for scientific computing in Python
Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul
Published in Nature methods (01.03.2020)
Published in Nature methods (01.03.2020)
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Journal Article
MetPy: A Meteorological Python Library for Data Analysis and Visualization
May, Ryan M., Goebbert, Kevin H., Thielen, Jonathan E., Leeman, John R., Camron, M. Drew, Bruick, Zachary, Bruning, Eric C., Manser, Russell P., Arms, Sean C., Marsh, Patrick T.
Published in Bulletin of the American Meteorological Society (01.10.2022)
Published in Bulletin of the American Meteorological Society (01.10.2022)
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Journal Article
Author Correction: SciPy 1.0: fundamental algorithms for scientific computing in Python
Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul
Published in Nature methods (01.03.2020)
Published in Nature methods (01.03.2020)
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Journal Article
LASSIM—A network inference toolbox for genome-wide mechanistic modeling
Magnusson, Rasmus, Mariotti, Guido Pio, Köpsén, Mattias, Lövfors, William, Gawel, Danuta R., Jörnsten, Rebecka, Linde, Jörg, Nordling, Torbjörn E. M., Nyman, Elin, Schulze, Sylvie, Nestor, Colm E., Zhang, Huan, Cedersund, Gunnar, Benson, Mikael, Tjärnberg, Andreas, Gustafsson, Mika
Published in PLoS computational biology (01.06.2017)
Published in PLoS computational biology (01.06.2017)
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Journal Article
A low complexity STPAP algorithm based on an alternating polarization-sensitive array
Sha, Shuang, Lyu, Tingting, Zhang, Hao, Gulliver, T. Aaron, Dong, Ying
Published in EURASIP journal on advances in signal processing (21.03.2022)
Published in EURASIP journal on advances in signal processing (21.03.2022)
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Journal Article
Using mechanistic Bayesian networks to identify downstream targets of the Sonic Hedgehog pathway
Shah, Abhik, Tenzen, Toyoaki, McMahon, Andrew P, Woolf, Peter J
Published in BMC bioinformatics (18.12.2009)
Published in BMC bioinformatics (18.12.2009)
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Journal Article
Performance improvement of dynamic PV array under partial shade conditions using M 2 algorithm
Manjunath, Matam, Venugopal Reddy, Barry, Lehman, Brad
Published in IET renewable power generation (10.06.2019)
Published in IET renewable power generation (10.06.2019)
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Journal Article
Sparse logistic regression with a L1/2 penalty for gene selection in cancer classification
Liang, Yong, Liu, Cheng, Luan, Xin-Ze, Leung, Kwong-Sak, Chan, Tak-Ming, Xu, Zong-Ben, Zhang, Hai
Published in BMC bioinformatics (19.06.2013)
Published in BMC bioinformatics (19.06.2013)
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Journal Article
lca_algebraic: a library bringing symbolic calculus to LCA for comprehensive sensitivity analysis
Jolivet, Raphaël, Clavreul, Julie, Brière, Raphaël, Besseau, Romain, Prieur Vernat, Anne, Sauze, Marie, Blanc, Isabelle, Douziech, Mélanie, Pérez-López, Paula
Published in The international journal of life cycle assessment (01.12.2021)
Published in The international journal of life cycle assessment (01.12.2021)
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Journal Article
Influence of dose calculation algorithms on the helical diode array using volumetric‐modulated arc therapy for small targets
Ono, Tomohiro, Hirashima, Hideaki, Adachi, Takanori, Iramina, Hiraku, Fujimoto, Takahiro, Uto, Megumi, Nakamura, Mitsuhiro, Mizowaki, Takashi
Published in Journal of applied clinical medical physics (01.07.2024)
Published in Journal of applied clinical medical physics (01.07.2024)
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Journal Article