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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
SciPy 1.0: fundamental algorithms for scientific computing in Python
Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul
Published in Nature methods (01.03.2020)
Published in Nature methods (01.03.2020)
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Journal Article
QFlow lite dataset: A machine-learning approach to the charge states in quantum dot experiments
Zwolak, Justyna P., Kalantre, Sandesh S., Wu, Xingyao, Ragole, Stephen, Taylor, Jacob M.
Published in PloS one (17.10.2018)
Published in PloS one (17.10.2018)
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Journal Article
MetPy: A Meteorological Python Library for Data Analysis and Visualization
May, Ryan M., Goebbert, Kevin H., Thielen, Jonathan E., Leeman, John R., Camron, M. Drew, Bruick, Zachary, Bruning, Eric C., Manser, Russell P., Arms, Sean C., Marsh, Patrick T.
Published in Bulletin of the American Meteorological Society (01.10.2022)
Published in Bulletin of the American Meteorological Society (01.10.2022)
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Journal Article
LASSIM—A network inference toolbox for genome-wide mechanistic modeling
Magnusson, Rasmus, Mariotti, Guido Pio, Köpsén, Mattias, Lövfors, William, Gawel, Danuta R., Jörnsten, Rebecka, Linde, Jörg, Nordling, Torbjörn E. M., Nyman, Elin, Schulze, Sylvie, Nestor, Colm E., Zhang, Huan, Cedersund, Gunnar, Benson, Mikael, Tjärnberg, Andreas, Gustafsson, Mika
Published in PLoS computational biology (01.06.2017)
Published in PLoS computational biology (01.06.2017)
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Journal Article
Comprehensive Evaluation of Satellite-Based Rainfall Measurements Through Rain Gauge Validation Using Advanced Statistical Regression and Machine Learning Models by Using Python: Comprehensive Evaluation of Satellite-Based Rainfall Measurements Through Rain Gauge Validation Using Advanced Statistical Regression and Machine Learning Models by Using Python
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Journal Article
Author Correction: SciPy 1.0: fundamental algorithms for scientific computing in Python
Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul
Published in Nature methods (01.03.2020)
Published in Nature methods (01.03.2020)
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Journal Article
Efficient multi-objective calibration of a computationally intensive hydrologic model with parallel computing software in Python
Zhang, Xuesong, Beeson, Peter, Link, Robert, Manowitz, David, Izaurralde, Roberto C., Sadeghi, Ali, Thomson, Allison M., Sahajpal, Ritvik, Srinivasan, Raghavan, Arnold, Jeffrey G.
Published in Environmental modelling & software : with environment data news (01.08.2013)
Published in Environmental modelling & software : with environment data news (01.08.2013)
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Journal Article
Fast and scalable algorithm for product large data on multicore system
Bahig, Hazem M., Bahig, Hatem M., Fathy, Khaled A.
Published in Concurrency and computation (25.01.2021)
Published in Concurrency and computation (25.01.2021)
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Journal Article
Beamforming Algorithm Based on the Orthogonal Phase Bases with Trigonometric Estimation for Microwave Power Transfer Systems
Koo, Hyungmo, Shin, Jaekyung, Choi, Woojin, Bin, Soohyun, Oh, Hansik, Lim, Hongjun, Lee, Kang-Yoon, Hwang, Keum cheol, Yang, Youngoo
Published in IEEE access (01.01.2022)
Published in IEEE access (01.01.2022)
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Journal Article
The Quantification of Myocardial Fibrosis on Human Histopathology Images by a Semi-Automatic Algorithm
Gonciar, Diana, Berciu, Alexandru-George, Danku, Alex Ede, Lorenzovici, Noemi, Dulf, Eva-Henrietta, Mocan, Teodora, Nicula, Sorina-Melinda, Agoston-Coldea, Lucia
Published in Applied sciences (01.09.2024)
Published in Applied sciences (01.09.2024)
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Journal Article
Radiation Pattern Synthesis Using Constraint Convex Optimization Algorithm for Conformal Antenna Array
Khan, Taimur Ahmed, Khattak, Muhammad Irfan, Basit, Abdul, AlQahtani, Salman A., Alawwad, Abdulaziz M., Alotaibi, Abdullilah A.
Published in Applied sciences (01.11.2023)
Published in Applied sciences (01.11.2023)
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Journal Article
VMseg: Using spatial variance to automatically segment retinal non-perfusion on OCT-angiography
LE BOITE, Hugo, COUTURIER, Aude, TADAYONI, Ramin, LAMARD, Mathieu, QUELLEC, Gwenolé
Published in PloS one (07.08.2024)
Published in PloS one (07.08.2024)
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Journal Article
Screening for Parkinson’s disease using “computer vision”
Kasemsap, Narongrit, Tikkapanyo, Purinat, Wanjantuk, Panupong, Vorasoot, Nisa, Kongbunkiat, Kannikar, Panitchote, Anupol
Published in PloS one (12.08.2025)
Published in PloS one (12.08.2025)
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Journal Article