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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
SciPy 1.0: fundamental algorithms for scientific computing in Python
Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul
Published in Nature methods (01.03.2020)
Published in Nature methods (01.03.2020)
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Journal Article
Sb 2 S 3 -Based Dynamically Tuned Color Filter Array via Genetic Algorithm
Wei, Xueling, Nong, Jie, Zhang, Yiyi, Ma, Hansi, Huang, Rixing, Yuan, Zhenkun, Zhang, Zhenfu, Zhang, Zhenrong, Yang, Junbo
Published in Nanomaterials (Basel, Switzerland) (24.04.2023)
Published in Nanomaterials (Basel, Switzerland) (24.04.2023)
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Journal Article
Author Correction: SciPy 1.0: fundamental algorithms for scientific computing in Python
Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul
Published in Nature methods (01.03.2020)
Published in Nature methods (01.03.2020)
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Journal Article
LASSIM—A network inference toolbox for genome-wide mechanistic modeling
Magnusson, Rasmus, Mariotti, Guido Pio, Köpsén, Mattias, Lövfors, William, Gawel, Danuta R., Jörnsten, Rebecka, Linde, Jörg, Nordling, Torbjörn E. M., Nyman, Elin, Schulze, Sylvie, Nestor, Colm E., Zhang, Huan, Cedersund, Gunnar, Benson, Mikael, Tjärnberg, Andreas, Gustafsson, Mika
Published in PLoS computational biology (01.06.2017)
Published in PLoS computational biology (01.06.2017)
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Journal Article
Sb[sub.2]S[sub.3]-Based Dynamically Tuned Color Filter Array via Genetic Algorithm
Wei, Xueling, Nong, Jie, Zhang, Yiyi, Ma, Hansi, Huang, Rixing, Yuan, Zhenkun, Zhang, Zhenfu, Zhang, Zhenrong, Yang, Junbo
Published in Nanomaterials (Basel, Switzerland) (01.04.2023)
Published in Nanomaterials (Basel, Switzerland) (01.04.2023)
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Journal Article
Using mechanistic Bayesian networks to identify downstream targets of the Sonic Hedgehog pathway
Shah, Abhik, Tenzen, Toyoaki, McMahon, Andrew P, Woolf, Peter J
Published in BMC bioinformatics (18.12.2009)
Published in BMC bioinformatics (18.12.2009)
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Journal Article
Influence of dose calculation algorithms on the helical diode array using volumetric‐modulated arc therapy for small targets
Ono, Tomohiro, Hirashima, Hideaki, Adachi, Takanori, Iramina, Hiraku, Fujimoto, Takahiro, Uto, Megumi, Nakamura, Mitsuhiro, Mizowaki, Takashi
Published in Journal of applied clinical medical physics (01.07.2024)
Published in Journal of applied clinical medical physics (01.07.2024)
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Journal Article
lca_algebraic: a library bringing symbolic calculus to LCA for comprehensive sensitivity analysis
Jolivet, Raphaël, Clavreul, Julie, Brière, Raphaël, Besseau, Romain, Prieur Vernat, Anne, Sauze, Marie, Blanc, Isabelle, Douziech, Mélanie, Pérez-López, Paula
Published in The international journal of life cycle assessment (01.12.2021)
Published in The international journal of life cycle assessment (01.12.2021)
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Journal Article
3′ UTR seed matches, but not overall identity, are associated with RNAi off-targets
Birmingham, Amanda, Anderson, Emily M, Reynolds, Angela, Ilsley-Tyree, Diane, Leake, Devin, Fedorov, Yuriy, Baskerville, Scott, Maksimova, Elena, Robinson, Kathryn, Karpilow, Jon, Marshall, William S, Khvorova, Anastasia
Published in Nature methods (01.03.2006)
Published in Nature methods (01.03.2006)
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Journal Article