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Genome-wide functional analysis using the barcode sequence alignment and statistical analysis (Barcas) tool
Mun, Jihyeob, Kim, Dong-Uk, Hoe, Kwang-Lae, Kim, Seon-Young
Published in BMC bioinformatics (23.12.2016)
Published in BMC bioinformatics (23.12.2016)
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Journal Article
High-Throughput Approaches to Pinpoint Function within the Noncoding Genome
Montalbano, Antonino, Canver, Matthew C., Sanjana, Neville E.
Published in Molecular cell (05.10.2017)
Published in Molecular cell (05.10.2017)
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Journal Article
CRISPR‐Suppressor Scanning for Systematic Discovery of Drug‐Resistance Mutations
Published in Current protocols
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Journal Article
Multimodal pooled Perturb-CITE-seq screens in patient models define mechanisms of cancer immune evasion
Frangieh, Chris J., Melms, Johannes C., Thakore, Pratiksha I., Geiger-Schuller, Kathryn R., Ho, Patricia, Luoma, Adrienne M., Cleary, Brian, Jerby-Arnon, Livnat, Malu, Shruti, Cuoco, Michael S., Zhao, Maryann, Ager, Casey R., Rogava, Meri, Hovey, Lila, Rotem, Asaf, Bernatchez, Chantale, Wucherpfennig, Kai W., Johnson, Bruce E., Rozenblatt-Rosen, Orit, Schadendorf, Dirk, Regev, Aviv, Izar, Benjamin
Published in Nature genetics (01.03.2021)
Published in Nature genetics (01.03.2021)
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Journal Article
Protocol for pooled FACS-based CRISPR knockout screening in human iPSC-derived microglia
Washer, Sam J., Navarro-Guerrero, Elena, Cowley, Sally A., Ebner, Daniel V., Bassett, Andrew R.
Published in STAR protocols (19.12.2025)
Published in STAR protocols (19.12.2025)
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Journal Article
Pooled genetic perturbation screens with image-based phenotypes
Feldman, David, Funk, Luke, Le, Anna, Carlson, Rebecca J., Leiken, Michael D., Tsai, FuNien, Soong, Brian, Singh, Avtar, Blainey, Paul C.
Published in Nature protocols (01.02.2022)
Published in Nature protocols (01.02.2022)
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Journal Article
Optical Pooled Screens in Human Cells
Feldman, David, Singh, Avtar, Schmid-Burgk, Jonathan L., Carlson, Rebecca J., Mezger, Anja, Garrity, Anthony J., Zhang, Feng, Blainey, Paul C.
Published in CELL (17.10.2019)
Published in CELL (17.10.2019)
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Journal Article
Publication
A pooled single-cell genetic screen identifies regulatory checkpoints in the continuum of the epithelial-to-mesenchymal transition
McFaline-Figueroa, José L., Hill, Andrew J., Qiu, Xiaojie, Jackson, Dana, Shendure, Jay, Trapnell, Cole
Published in Nature genetics (01.09.2019)
Published in Nature genetics (01.09.2019)
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Journal Article
Integrative analysis of pooled CRISPR genetic screens using MAGeCKFlute
Wang, Binbin, Wang, Mei, Zhang, Wubing, Xiao, Tengfei, Chen, Chen-Hao, Wu, Alexander, Wu, Feizhen, Traugh, Nicole, Wang, Xiaoqing, Li, Ziyi, Mei, Shenglin, Cui, Yingbo, Shi, Sailing, Lipp, Jesse Jonathan, Hinterndorfer, Matthias, Zuber, Johannes, Brown, Myles, Li, Wei, Liu, X. Shirley
Published in Nature protocols (01.03.2019)
Published in Nature protocols (01.03.2019)
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Journal Article
BaSDAS: a web-based pooled CRISPR-Cas9 knockout screening data analysis system
Park, Young-Kyu, Yoon, Byoung-Ha, Park, Seung-Jin, Kim, Byung Kwon, Kim, Seon-Young
Published in Genomics & informatics (01.12.2020)
Published in Genomics & informatics (01.12.2020)
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Journal Article
Decoding pooled RNAi screens by means of barcode tiling arrays
Boettcher, Michael, Fredebohm, Johannes, Gholami, Amin Moghaddas, Hachmo, Yafit, Dotan, Iris, Canaani, Dan, Hoheisel, Jörg D
Published in BMC genomics (05.01.2010)
Published in BMC genomics (05.01.2010)
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Journal Article
CRISPR-UMI: single-cell lineage tracing of pooled CRISPR–Cas9 screens
Michlits, Georg, Hubmann, Maria, Wu, Szu-Hsien, Vainorius, Gintautas, Budusan, Elena, Zhuk, Sergei, Burkard, Thomas R, Novatchkova, Maria, Aichinger, Martin, Lu, Yiqing, Reece-Hoyes, John, Nitsch, Roberto, Schramek, Daniel, Hoepfner, Dominic, Elling, Ulrich
Published in Nature methods (01.12.2017)
Published in Nature methods (01.12.2017)
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Journal Article
Target discovery screens using pooled shRNA libraries and next-generation sequencing: A model workflow and analytical algorithm
Schaefer, Christiane, Mallela, Nikhil, Seggewiß, Jochen, Lechtape, Birgit, Omran, Heymut, Dirksen, Uta, Korsching, Eberhard, Potratz, Jenny
Published in PloS one (31.01.2018)
Published in PloS one (31.01.2018)
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Journal Article
Identification of novel cancer therapeutic targets using a designed and pooled shRNA library screen
Oliver, David, Ji, Hao, Liu, Piaomu, Gasparian, Alexander, Gardiner, Ellen, Lee, Samuel, Zenteno, Adrian, Perinskaya, Lillian O., Chen, Mengqian, Buckhaults, Phillip, Broude, Eugenia, Wyatt, Michael D., Valafar, Homayoun, Peña, Edsel, Shtutman, Michael
Published in Scientific reports (22.02.2017)
Published in Scientific reports (22.02.2017)
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Journal Article