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uShuffle: A useful tool for shuffling biological sequences while preserving the k-let counts
Jiang, Minghui, Anderson, James, Gillespie, Joel, Mayne, Martin
Published in BMC bioinformatics (11.04.2008)
Published in BMC bioinformatics (11.04.2008)
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Journal Article
BAMQL: a query language for extracting reads from BAM files
Masella, Andre P., Lalansingh, Christopher M., Sivasundaram, Pragash, Fraser, Michael, Bristow, Robert G., Boutros, Paul C.
Published in BMC bioinformatics (11.08.2016)
Published in BMC bioinformatics (11.08.2016)
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Journal Article
GRIMM: GRaph IMputation and matching for HLA genotypes
Maiers, Martin, Halagan, Michael, Gragert, Loren, Bashyal, Pradeep, Brelsford, Jason, Schneider, Joel, Lutsker, Polina, Louzoun, Yoram
Published in Bioinformatics (15.09.2019)
Published in Bioinformatics (15.09.2019)
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Journal Article
LibSBML: an API Library for SBML
Bornstein, Benjamin J., Keating, Sarah M., Jouraku, Akiya, Hucka, Michael
Published in Bioinformatics (15.03.2008)
Published in Bioinformatics (15.03.2008)
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Journal Article
ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data
Zagordi, Osvaldo, Bhattacharya, Arnab, Eriksson, Nicholas, Beerenwinkel, Niko
Published in BMC bioinformatics (26.04.2011)
Published in BMC bioinformatics (26.04.2011)
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Journal Article
pyFIT3D and pyPipe3D — The new version of the integral field spectroscopy data analysis pipeline
Lacerda, Eduardo A.D., Sánchez, S.F., Mejía-Narváez, A., Camps-Fariña, A., Espinosa-Ponce, C., Barrera-Ballesteros, J.K., Ibarra-Medel, H., Lugo-Aranda, A.Z.
Published in New astronomy (01.11.2022)
Published in New astronomy (01.11.2022)
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Journal Article
The Bioperl Toolkit: Perl Modules for the Life Sciences
Stajich, Jason E., Block, David, Boulez, Kris, Brenner, Steven E., Chervitz, Stephen A., Dagdigian, Chris, Fuellen, Georg, Gilbert, James G.R., Korf, Ian, Lapp, Hilmar, Lehväslaiho, Heikki, Matsalla, Chad, Mungall, Chris J., Osborne, Brian I., Pocock, Matthew R., Schattner, Peter, Senger, Martin, Stein, Lincoln D., Stupka, Elia, Wilkinson, Mark D., Birney, Ewan
Published in Genome research (01.10.2002)
Published in Genome research (01.10.2002)
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Journal Article
SciPy 1.0: fundamental algorithms for scientific computing in Python
Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul
Published in Nature methods (01.03.2020)
Published in Nature methods (01.03.2020)
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Journal Article
pyFIT3D and pyPipe3D -- The new version of the Integral Field Spectroscopy data analysis pipeline
Lacerda, Eduardo A D, Sánchez, S F, Mejía-Narváez, A, Camps-Fariña, A, Espinosa-Ponce, C, Barrera-Ballesteros, J K, Ibarra-Medel, H, Lugo-Aranda, A Z
Published in arXiv.org (26.07.2022)
Published in arXiv.org (26.07.2022)
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Paper
Journal Article
Portable BLAST-like algorithm library and its implementations for command line, Python, and R
Schmid, Steven, Jeevannavar, Aditya, Julian, Timothy R., Tamminen, Manu
Published in PloS one (30.11.2023)
Published in PloS one (30.11.2023)
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Journal Article